PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6501-6550 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.5673 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7685 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7923 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9964 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9938 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | * | tech_badpromoters | het | 97.5000 | 100.0000 | 95.1220 | 44.5946 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 92.0000 | 95.4463 | 0 | 0 | 69 | 6 | 4 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 84.6154 | 96.1367 | 0 | 0 | 22 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 96.6667 | 94.6043 | 0 | 0 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 94.7368 | 95.4545 | 0 | 0 | 18 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 94.2029 | 89.5928 | 0 | 0 | 65 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 91.3043 | 89.9123 | 0 | 0 | 21 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 96.4286 | 87.8261 | 0 | 0 | 27 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 94.4444 | 91.2195 | 0 | 0 | 17 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 87.8788 | 88.4211 | 0 | 0 | 29 | 4 | 4 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 60.0000 | 89.3617 | 0 | 0 | 3 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 96.2963 | 88.0000 | 0 | 0 | 26 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | func_cds | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 97.6684 | 0 | 0 | 6 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 33.3333 | 97.8261 | 0 | 0 | 1 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 97.5309 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 97.6744 | 0 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.7500 | 95.8060 | 0 | 0 | 30 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 91.6667 | 95.6522 | 0 | 0 | 11 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 92.3077 | 95.7377 | 0 | 0 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 89.4737 | 96.2891 | 0 | 0 | 34 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 78.5714 | 96.2766 | 0 | 0 | 11 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 93.3333 | 96.1929 | 0 | 0 | 14 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4567 | 0 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.8254 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.7742 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 94.1176 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||