PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
65001-65050 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | ti | map_l125_m1_e0 | homalt | 99.7461 | 99.6016 | 99.8910 | 65.4505 | 11001 | 44 | 11001 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | homalt | 99.7531 | 99.6126 | 99.8940 | 67.9785 | 11314 | 44 | 11314 | 12 | 12 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | homalt | 99.7553 | 99.6160 | 99.8950 | 68.0185 | 11414 | 44 | 11415 | 12 | 12 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e1 | het | 97.0778 | 95.2381 | 98.9899 | 83.8059 | 880 | 44 | 882 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_siren | homalt | 98.9758 | 98.3427 | 99.6172 | 74.6678 | 2611 | 44 | 2602 | 10 | 7 | 70.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.5497 | 95.4214 | 97.7049 | 66.6424 | 917 | 44 | 894 | 21 | 10 | 47.6190 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3225 | 98.7905 | 99.8601 | 50.4916 | 3594 | 44 | 3570 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | HG002compoundhet | het | 96.0823 | 94.8235 | 97.3750 | 74.4000 | 806 | 44 | 779 | 21 | 5 | 23.8095 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.0746 | 93.3535 | 96.8603 | 74.0318 | 618 | 44 | 617 | 20 | 2 | 10.0000 | |
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 17.2414 | 10.2041 | 55.5556 | 59.0909 | 5 | 44 | 5 | 4 | 3 | 75.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m1_e0 | homalt | 47.6190 | 31.2500 | 100.0000 | 93.2692 | 20 | 44 | 14 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | HG002compoundhet | hetalt | 97.1488 | 94.8956 | 99.5116 | 22.8814 | 818 | 44 | 815 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 47.6190 | 0.0000 | 0.0000 | 40 | 44 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 15.3846 | 0.0000 | 0.0000 | 8 | 44 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | map_l100_m2_e0 | het | 90.5891 | 98.0928 | 84.1518 | 89.9495 | 2263 | 44 | 2262 | 426 | 198 | 46.4789 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002compoundhet | het | 34.2987 | 89.1358 | 21.2349 | 37.1418 | 361 | 44 | 368 | 1365 | 1360 | 99.6337 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | homalt | 95.2066 | 92.9032 | 97.6271 | 78.5766 | 576 | 44 | 576 | 14 | 2 | 14.2857 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | segdup | hetalt | 0.0000 | 2.2222 | 0.0000 | 0.0000 | 1 | 44 | 0 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0759 | 98.6453 | 88.1018 | 77.5526 | 3204 | 44 | 3221 | 435 | 34 | 7.8161 | |
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | * | 94.5118 | 96.7883 | 92.3398 | 94.5924 | 1326 | 44 | 1326 | 110 | 17 | 15.4545 | |
| hfeng-pmm1 | INDEL | * | HG002complexvar | homalt | 99.7782 | 99.8372 | 99.7192 | 55.9241 | 26983 | 44 | 26991 | 76 | 70 | 92.1053 | |
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 44 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.1833 | 90.4762 | 93.9560 | 39.3333 | 418 | 44 | 171 | 11 | 10 | 90.9091 | |
| gduggal-snapfb | INDEL | D1_5 | map_l100_m2_e0 | het | 95.7149 | 96.4968 | 94.9456 | 82.1389 | 1212 | 44 | 1221 | 65 | 8 | 12.3077 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.7366 | 54.6392 | 85.7143 | 3.4483 | 53 | 44 | 24 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 35.4132 | 25.4237 | 58.3333 | 64.1791 | 15 | 44 | 14 | 10 | 10 | 100.0000 | |
| gduggal-snapplat | SNP | tv | HG002compoundhet | hetalt | 97.1488 | 94.8956 | 99.5116 | 22.8814 | 818 | 44 | 815 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | het | 13.5593 | 8.3333 | 36.3636 | 95.1754 | 4 | 44 | 4 | 7 | 2 | 28.5714 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 17.3977 | 88.6010 | 9.6459 | 80.7136 | 342 | 44 | 365 | 3419 | 49 | 1.4332 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 41.5632 | 96.5217 | 26.4836 | 86.5727 | 1221 | 44 | 1254 | 3481 | 67 | 1.9247 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 88.7788 | 99.0616 | 80.4299 | 50.4389 | 4645 | 44 | 4677 | 1138 | 26 | 2.2847 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.4663 | 98.5411 | 85.3394 | 78.6638 | 2972 | 44 | 2829 | 486 | 15 | 3.0864 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.7434 | 99.1886 | 98.3021 | 75.3952 | 5379 | 44 | 5095 | 88 | 22 | 25.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.7434 | 99.1886 | 98.3021 | 75.3952 | 5379 | 44 | 5095 | 88 | 22 | 25.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 85.4009 | 81.1159 | 90.1639 | 84.0314 | 189 | 44 | 110 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 87.4768 | 80.1802 | 96.2343 | 47.0067 | 178 | 44 | 230 | 9 | 9 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 23.8185 | 13.7255 | 90.0000 | 71.4286 | 7 | 44 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 93.1964 | 89.2944 | 97.4551 | 80.1427 | 367 | 44 | 651 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 62.5000 | 47.6190 | 90.9091 | 74.4186 | 40 | 44 | 60 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_siren | het | 97.1764 | 97.3825 | 96.9713 | 77.3988 | 1637 | 44 | 1889 | 59 | 41 | 69.4915 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | * | 72.3926 | 57.2816 | 98.3333 | 96.0186 | 59 | 44 | 59 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e0 | het | 78.7330 | 66.4122 | 96.6667 | 95.8640 | 87 | 44 | 87 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e0 | * | 76.5957 | 62.0690 | 100.0000 | 93.5426 | 72 | 44 | 72 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m2_e1 | * | 76.5957 | 62.0690 | 100.0000 | 93.7008 | 72 | 44 | 72 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | func_cds | * | 99.4027 | 98.9934 | 99.8155 | 42.5143 | 4327 | 44 | 4327 | 8 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 81.4625 | 93.8889 | 71.9409 | 88.0905 | 676 | 44 | 682 | 266 | 37 | 13.9098 | |
| gduggal-bwavard | INDEL | * | map_l100_m2_e0 | het | 90.0912 | 98.0928 | 83.2966 | 90.0573 | 2263 | 44 | 2269 | 455 | 186 | 40.8791 | |