PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
6451-6500 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.2222 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 92.9577 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.6364 | 16 | 0 | 16 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.0351 | 41 | 0 | 41 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.8537 | 42 | 0 | 42 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 65.3226 | 43 | 0 | 43 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.8750 | 9 | 0 | 9 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 63.4146 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 30 | 0 | 30 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.3636 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 20 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.5882 | 20 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.0145 | 20 | 0 | 20 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.1852 | 4 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 5 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9027 | 7 | 0 | 7 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg1 | SNP | tv | tech_badpromoters | het | 92.9577 | 100.0000 | 86.8421 | 59.1398 | 33 | 0 | 33 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ltrigg-rtg2 | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.8898 | 10 | 0 | 12 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.8803 | 6 | 0 | 8 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8503 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9119 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 96.2963 | 100.0000 | 92.8571 | 99.1495 | 12 | 0 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0519 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.6522 | 100.0000 | 91.6667 | 99.2551 | 10 | 0 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9592 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 94.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||