PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1295 1296 1297 1298 1299 1300 1301 1302 1303 ... 1720 1721 » 64901-64950 / 86044 show all
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7919	99.6278	99.9566	63.4476	11509	43	11509	5	4	80.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7919	99.6278	99.9566	63.4476	11509	43	11509	5	4	80.0000
bgallagher-sentieon	SNP	ti	map_l100_m0_e0	homalt	99.6648	99.4469	99.8837	59.2653	7731	43	7731	9	7	77.7778
asubramanian-gatk	SNP	*	func_cds	het	99.5968	99.6147	99.5789	34.4684	11118	43	11115	47	1	2.1277
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	93.0177	97.5624	88.8776	88.4848	1721	43	1742	218	16	7.3395
anovak-vg	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	*	49.6562	36.7647	76.4706	96.4620	25	43	26	8	7	87.5000
anovak-vg	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	89.8651	88.3469	91.4365	80.2294	326	43	331	31	20	64.5161
anovak-vg	INDEL	D1_5	segdup	hetalt	0.0000	17.3077	0.0000	0.0000	9	43	0	0	0
astatham-gatk	INDEL	D1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	96.7394	96.9504	96.5293	75.1304	1367	43	1335	48	39	81.2500
bgallagher-sentieon	INDEL	D16_PLUS	HG002complexvar	*	97.3999	97.3828	97.4170	66.7553	1600	43	1584	42	31	73.8095
anovak-vg	INDEL	I16_PLUS	map_siren	het	21.4286	12.2449	85.7143	75.8621	6	43	6	1	0	0.0000
anovak-vg	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	0.0000	17.3077	0.0000	0.0000	9	43	0	0	0
anovak-vg	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	68.6189	80.5430	59.7701	87.2900	178	43	208	140	52	37.1429
anovak-vg	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	83.9922	90.3153	78.4965	79.8804	401	43	449	123	104	84.5528
anovak-vg	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	60.5316	65.3226	56.3953	87.8359	81	43	97	75	22	29.3333
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3536	99.3753	99.3320	81.7241	6840	43	6840	46	15	32.6087
ckim-dragen	SNP	*	HG002compoundhet	het	99.7322	99.6967	99.7677	46.4046	14135	43	14173	33	8	24.2424
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.2827	98.9017	99.6667	74.9583	3872	43	3887	13	6	46.1538
ckim-dragen	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	97.3295	95.4449	99.2901	33.1072	901	43	979	7	7	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.3289	97.6004	97.0588	69.9817	1749	43	1749	53	38	71.6981
cchapple-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	95.6283	95.0913	96.1713	57.6972	833	43	2537	101	95	94.0594
cchapple-custom	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	94.5153	0.0000	0.0000	741	43	0	0	0
cchapple-custom	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	98.0504	96.7449	99.3916	61.8066	1278	43	1307	8	8	100.0000
ciseli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	48.1114	83.3977	33.8073	56.3749	216	43	214	419	397	94.7494
ciseli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	67.0086	90.2935	53.2710	31.8471	400	43	399	350	337	96.2857
ciseli-custom	INDEL	D6_15	segdup	hetalt	0.0000	12.2449	0.0000	0.0000	6	43	0	0	0
ciseli-custom	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	0.0000	2.2727	0.0000	0.0000	1	43	0	0	0
ckim-isaac	SNP	ti	*	hetalt	96.1641	92.6117	100.0000	30.2717	539	43	539	0	0
ckim-isaac	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	96.9558	94.9708	99.0256	50.8383	812	43	813	8	1	12.5000
ckim-isaac	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	82.5264	78.6070	86.8571	81.0401	158	43	152	23	4	17.3913
ckim-isaac	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	70.1319	59.4340	85.5263	73.7024	63	43	65	11	7	63.6364
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	87.6652	82.2314	93.8679	58.9147	199	43	199	13	3	23.0769
egarrison-hhga	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	92.6472	93.4150	91.8919	71.8393	610	43	612	54	41	75.9259
egarrison-hhga	SNP	*	map_l100_m0_e0	homalt	99.7759	99.6299	99.9223	61.7548	11577	43	11577	9	8	88.8889
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6571	99.3874	99.9283	62.5798	6976	43	6972	5	3	60.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	97.5970	99.0328	96.2023	69.6244	4403	43	4357	172	164	95.3488
ckim-vqsr	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.1094	98.3822	99.8474	70.7576	2615	43	2617	4	3	75.0000
ckim-vqsr	INDEL	I1_5	map_l100_m2_e1	het	96.5415	94.6914	98.4655	90.6122	767	43	770	12	1	8.3333
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.5099	97.8184	99.2114	76.2576	1928	43	1887	15	6	40.0000
ckim-vqsr	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.5099	97.8184	99.2114	76.2576	1928	43	1887	15	6	40.0000
ckim-vqsr	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.9186	98.5743	99.2654	69.9659	2973	43	2973	22	9	40.9091
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8555	99.7467	99.9646	71.3411	16932	43	16932	6	3	50.0000
hfeng-pmm3	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8555	99.7467	99.9646	71.3411	16932	43	16932	6	3	50.0000
hfeng-pmm3	SNP	ti	map_l250_m2_e1	*	99.1724	99.1529	99.1920	88.8826	5033	43	5033	41	5	12.1951
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.0815	98.3991	99.7735	47.4300	2643	43	2643	6	0	0.0000
hfeng-pmm1	SNP	*	map_l100_m1_e0	homalt	99.8556	99.8408	99.8703	60.9594	26960	43	26960	35	17	48.5714
hfeng-pmm1	SNP	*	map_l100_m2_e0	homalt	99.8583	99.8438	99.8728	63.3749	27480	43	27480	35	17	48.5714
hfeng-pmm1	SNP	*	map_l100_m2_e1	homalt	99.8597	99.8453	99.8740	63.3660	27753	43	27753	35	17	48.5714
jlack-gatk	SNP	ti	map_l250_m2_e0	homalt	98.6412	97.5415	99.7661	86.8218	1706	43	1706	4	3	75.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.8684	99.6256	98.1226	58.6142	11441	43	11446	219	209	95.4338

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge