PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64851-64900 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | * | func_cds | * | 91.7808 | 90.3371 | 93.2715 | 40.6336 | 402 | 43 | 402 | 29 | 28 | 96.5517 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 14.8148 | 8.5106 | 57.1429 | 80.5556 | 4 | 43 | 4 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D1_5 | map_l100_m1_e0 | homalt | 95.8115 | 92.7365 | 99.0975 | 76.8491 | 549 | 43 | 549 | 5 | 2 | 40.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l100_m2_e0 | homalt | 95.8650 | 92.9624 | 98.9547 | 77.9992 | 568 | 43 | 568 | 6 | 2 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 94.0963 | 91.3481 | 97.0149 | 75.7623 | 454 | 43 | 455 | 14 | 10 | 71.4286 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1381 | 99.6239 | 98.6571 | 45.3917 | 11390 | 43 | 11387 | 155 | 1 | 0.6452 | |
| ltrigg-rtg1 | SNP | * | map_l100_m0_e0 | homalt | 99.7372 | 99.6299 | 99.8447 | 62.2918 | 11577 | 43 | 11575 | 18 | 15 | 83.3333 | |
| ltrigg-rtg1 | SNP | * | map_l150_m1_e0 | homalt | 99.7513 | 99.6186 | 99.8844 | 70.3814 | 11230 | 43 | 11232 | 13 | 13 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_l150_m2_e0 | homalt | 99.7604 | 99.6324 | 99.8886 | 72.6706 | 11656 | 43 | 11658 | 13 | 13 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e0 | het | 97.0759 | 95.2539 | 98.9691 | 83.7521 | 863 | 43 | 864 | 9 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | * | 97.2714 | 95.0174 | 99.6350 | 76.9941 | 820 | 43 | 819 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 73.8028 | 60.1852 | 95.3846 | 71.2389 | 65 | 43 | 62 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.0739 | 75.9777 | 99.2647 | 40.3509 | 136 | 43 | 135 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.6237 | 98.6866 | 98.5609 | 63.0877 | 3231 | 43 | 3219 | 47 | 44 | 93.6170 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.1944 | 96.7449 | 99.6880 | 59.3016 | 1278 | 43 | 1278 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m1_e0 | * | 93.8197 | 91.5020 | 96.2578 | 89.2801 | 463 | 43 | 463 | 18 | 11 | 61.1111 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.7184 | 99.3562 | 96.1338 | 51.2081 | 6636 | 43 | 6639 | 267 | 254 | 95.1311 | |
| rpoplin-dv42 | INDEL | I1_5 | map_siren | * | 98.7675 | 98.5691 | 98.9667 | 80.4011 | 2962 | 43 | 2969 | 31 | 18 | 58.0645 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.6387 | 99.6019 | 99.6756 | 81.2035 | 10758 | 43 | 10754 | 35 | 19 | 54.2857 | |
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8658 | 99.8462 | 99.8855 | 53.8968 | 27916 | 43 | 27913 | 32 | 19 | 59.3750 | |
| rpoplin-dv42 | SNP | ti | segdup | * | 99.7773 | 99.7799 | 99.7748 | 89.3733 | 19494 | 43 | 19492 | 44 | 19 | 43.1818 | |
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.8590 | 99.8446 | 99.8734 | 64.1005 | 27635 | 43 | 27622 | 35 | 19 | 54.2857 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | * | 97.8362 | 96.7150 | 98.9836 | 65.6644 | 1266 | 43 | 1266 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | I6_15 | HG002compoundhet | het | 75.0365 | 79.3269 | 71.1864 | 85.5155 | 165 | 43 | 126 | 51 | 51 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.9332 | 98.3991 | 99.4731 | 46.9555 | 2643 | 43 | 2643 | 14 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e0 | het | 97.6481 | 96.9087 | 98.3988 | 86.9392 | 1348 | 43 | 1352 | 22 | 7 | 31.8182 | |
| rpoplin-dv42 | INDEL | * | map_l125_m2_e1 | het | 97.6418 | 96.9460 | 98.3477 | 87.0294 | 1365 | 43 | 1369 | 23 | 8 | 34.7826 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.0350 | 97.4018 | 92.7804 | 51.2443 | 1612 | 43 | 2763 | 215 | 42 | 19.5349 | |
| qzeng-custom | INDEL | I1_5 | HG002compoundhet | het | 92.1803 | 94.9412 | 89.5755 | 66.2595 | 807 | 43 | 5740 | 668 | 571 | 85.4790 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002compoundhet | het | 93.5628 | 89.3827 | 98.1530 | 48.0110 | 362 | 43 | 372 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.7268 | 93.0195 | 98.5965 | 56.9811 | 573 | 43 | 562 | 8 | 8 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.6005 | 95.5255 | 97.6999 | 63.9558 | 918 | 43 | 892 | 21 | 10 | 47.6190 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2828 | 99.0685 | 99.4980 | 45.3418 | 4573 | 43 | 4559 | 23 | 2 | 8.6957 | |
| qzeng-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6287 | 99.3874 | 99.8711 | 62.1463 | 6976 | 43 | 6975 | 9 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1781 | 98.5667 | 99.7971 | 74.2130 | 2957 | 43 | 2951 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m1_e0 | het | 97.3655 | 96.7790 | 97.9592 | 85.1598 | 1292 | 43 | 1296 | 27 | 3 | 11.1111 | |
| mlin-fermikit | INDEL | D6_15 | map_siren | hetalt | 71.7865 | 56.5657 | 98.2143 | 72.8155 | 56 | 43 | 55 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.7893 | 96.6821 | 98.9221 | 82.4044 | 1253 | 43 | 1193 | 13 | 1 | 7.6923 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5837 | 99.2071 | 99.9631 | 70.9548 | 5380 | 43 | 5419 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5837 | 99.2071 | 99.9631 | 70.9548 | 5380 | 43 | 5419 | 2 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | segdup | hetalt | 80.1843 | 66.9231 | 100.0000 | 93.8999 | 87 | 43 | 89 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2193 | 94.2819 | 94.1567 | 58.3748 | 709 | 43 | 709 | 44 | 28 | 63.6364 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8001 | 98.8271 | 98.7732 | 47.1774 | 3623 | 43 | 3623 | 45 | 33 | 73.3333 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 76.4074 | 92.9624 | 64.8574 | 57.8355 | 568 | 43 | 705 | 382 | 375 | 98.1675 | |
| ndellapenna-hhga | INDEL | I1_5 | map_siren | * | 98.9476 | 98.5691 | 99.3291 | 79.9192 | 2962 | 43 | 2961 | 20 | 6 | 30.0000 | |
| ndellapenna-hhga | SNP | ti | map_l100_m0_e0 | homalt | 99.6905 | 99.4469 | 99.9354 | 59.4017 | 7731 | 43 | 7731 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.2204 | 94.5844 | 97.9140 | 85.0487 | 751 | 43 | 751 | 16 | 7 | 43.7500 | |