PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1293 1294 1295 1296 1297 1298 1299 1300 1301 ... 1720 1721 » 64801-64850 / 86044 show all
ckim-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5862	99.7647	99.4083	59.0715	17809	42	17808	106	7	6.6038
gduggal-snapvard	INDEL	D6_15	map_l100_m1_e0	hetalt	0.0000	38.2353	0.0000	0.0000	26	42	0	0	0
gduggal-snapvard	INDEL	D6_15	map_l100_m2_e0	hetalt	0.0000	38.2353	0.0000	0.0000	26	42	0	0	0
gduggal-snapvard	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.4271	97.3897	99.4869	56.2693	1567	42	1551	8	4	50.0000
gduggal-snapvard	SNP	*	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	42	0	0	0
gduggal-snapvard	SNP	*	map_l250_m0_e0	homalt	95.9878	93.3227	98.8095	92.9615	587	42	581	7	6	85.7143
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	88.8749	91.2134	86.6534	76.1180	436	42	435	67	12	17.9104
ghariani-varprowl	SNP	*	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	42	0	0	0
ghariani-varprowl	SNP	tv	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	42	0	0	0
ghariani-varprowl	SNP	tv	segdup	*	97.0800	99.5077	94.7680	93.4258	8490	42	8495	469	32	6.8230
hfeng-pmm1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	97.3498	96.6561	98.0535	76.7797	1214	42	1209	24	3	12.5000
gduggal-snapplat	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	50.0000	39.1304	69.2308	97.4017	27	42	27	12	6	50.0000
gduggal-snapplat	SNP	tv	func_cds	*	99.2890	99.0391	99.5401	39.3276	4329	42	4329	20	0	0.0000
gduggal-snapvard	INDEL	D16_PLUS	lowcmp_SimpleRepeat_homopolymer_gt10	het	8.6207	4.5455	83.3333	89.2857	2	42	5	1	1	100.0000
gduggal-snapvard	INDEL	D16_PLUS	map_l100_m1_e0	het	14.2857	8.6957	40.0000	95.1456	4	42	4	6	1	16.6667
gduggal-snapplat	INDEL	D1_5	map_l125_m0_e0	homalt	83.4646	71.6216	100.0000	91.9283	106	42	126	0	0
gduggal-snapplat	INDEL	D1_5	segdup	homalt	91.2889	88.3008	94.4862	94.9101	317	42	377	22	10	45.4545
gduggal-snapplat	INDEL	I1_5	map_l150_m0_e0	*	81.2121	76.1364	87.0130	96.7157	134	42	134	20	1	5.0000
gduggal-snapfb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	87.0072	98.9272	77.6508	87.8604	3873	42	3874	1115	74	6.6368
gduggal-snapvard	SNP	tv	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	42	0	0	0
gduggal-snapvard	SNP	tv	map_l250_m0_e0	*	78.0985	94.5098	66.5434	94.1611	723	42	720	362	4	1.1050
ghariani-varprowl	INDEL	*	map_l125_m2_e0	hetalt		0.0000	0.0000	0.0000	0	42	0	0	0
ghariani-varprowl	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	het	55.0794	89.0909	39.8618	59.0952	343	42	346	522	495	94.8276
gduggal-snapvard	SNP	tv	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	43	0	0	0
ghariani-varprowl	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	14.8148	8.5106	57.1429	80.5556	4	43	4	3	2	66.6667
ghariani-varprowl	INDEL	*	map_l125_m2_e1	hetalt		0.0000	0.0000	0.0000	0	43	0	0	0
ghariani-varprowl	INDEL	D1_5	map_l100_m1_e0	homalt	95.1473	92.7365	97.6868	77.2562	549	43	549	13	2	15.3846
ghariani-varprowl	INDEL	D1_5	map_l100_m2_e0	homalt	95.2221	92.9624	97.5945	78.4125	568	43	568	14	2	14.2857
ghariani-varprowl	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	0.0000	2.2727	0.0000	0.0000	1	43	0	0	0
ghariani-varprowl	SNP	*	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	43	0	0	0
ghariani-varprowl	SNP	*	map_l250_m0_e0	het	91.3804	97.1448	86.2618	95.0573	1463	43	1463	233	27	11.5880
ghariani-varprowl	SNP	tv	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	43	0	0	0
gduggal-snapvard	INDEL	D1_5	map_l100_m0_e0	*	87.0777	95.0174	80.3625	87.2790	820	43	1064	260	71	27.3077
gduggal-snapvard	INDEL	I1_5	map_l125_m1_e0	*	90.5689	94.8193	86.6832	88.0250	787	43	1048	161	65	40.3727
gduggal-snapvard	SNP	*	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	43	0	0	0
gduggal-snapfb	INDEL	D1_5	map_l100_m1_e0	het	95.6711	96.4433	94.9111	81.1539	1166	43	1175	63	7	11.1111
gduggal-snapfb	INDEL	D6_15	map_l100_m2_e1	het	79.7221	68.1481	96.0317	76.1815	92	43	121	5	4	80.0000
gduggal-snapplat	INDEL	D1_5	map_l250_m1_e0	*	80.7499	74.8538	87.6543	97.7406	128	43	142	20	5	25.0000
gduggal-snapplat	INDEL	I1_5	map_l125_m0_e0	het	80.9783	77.6042	84.6591	95.8412	149	43	149	27	0	0.0000
gduggal-bwaplat	INDEL	D6_15	map_l125_m1_e0	*	77.4869	63.2479	100.0000	95.7544	74	43	74	0	0
gduggal-bwaplat	INDEL	I6_15	map_l100_m1_e0	*	76.7568	62.2807	100.0000	92.9703	71	43	71	0	0
gduggal-bwafb	INDEL	D6_15	HG002complexvar	homalt	93.8652	96.3216	91.5309	60.1040	1126	43	1124	104	101	97.1154
gduggal-bwafb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	81.1184	79.6209	82.6733	50.0000	168	43	167	35	34	97.1429
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	92.3366	91.0042	93.7086	71.1832	435	43	566	38	38	100.0000
gduggal-bwavard	SNP	*	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	43	0	0	0
gduggal-bwavard	SNP	tv	map_l100_m2_e1	hetalt		0.0000	0.0000	0.0000	0	43	0	0	0
gduggal-bwavard	INDEL	*	lowcmp_SimpleRepeat_triTR_51to200	homalt	15.0943	8.5106	66.6667	66.6667	4	43	4	2	2	100.0000
gduggal-bwavard	INDEL	*	map_l125_m1_e0	homalt	96.4972	94.1257	98.9914	79.7491	689	43	687	7	4	57.1429
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.1428	99.3625	98.9241	34.6525	6702	43	6436	70	24	34.2857
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.3929	99.1600	99.6269	75.2923	5076	43	5074	19	13	68.4211

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge