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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1291 1292 1293 1294 1295 1296 1297 1298 1299 ... 1720 1721 » 64701-64750 / 86044 show all
jmaeng-gatk	INDEL	*	map_l100_m2_e1	het	96.1817	98.2074	94.2378	90.6863	2301	42	2306	141	14	9.9291
jmaeng-gatk	INDEL	*	map_l125_m2_e1	*	96.6186	98.1124	95.1697	91.5159	2183	42	2187	111	11	9.9099
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	97.7927	97.6562	97.9295	69.6398	1750	42	1750	37	33	89.1892
anovak-vg	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	69.9850	66.9291	73.3333	68.5864	85	42	88	32	20	62.5000
astatham-gatk	INDEL	D1_5	map_l125_m2_e1	het	95.7305	94.5455	96.9456	88.5091	728	42	730	23	3	13.0435
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2431	99.2607	97.2461	57.3108	5639	42	5650	160	149	93.1250
asubramanian-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	93.3603	88.9474	98.2340	60.9483	338	42	445	8	8	100.0000
asubramanian-gatk	SNP	*	map_siren	hetalt	65.0000	48.1481	100.0000	84.2105	39	42	39	0	0
asubramanian-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	98.6320	97.9249	99.3493	69.0808	1982	42	1985	13	5	38.4615
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	39.9479	48.7805	33.8235	55.5556	40	42	69	135	108	80.0000
anovak-vg	INDEL	I1_5	map_l250_m2_e0	*	59.4374	62.8319	56.3910	96.6841	71	42	75	58	33	56.8966
anovak-vg	INDEL	I1_5	map_l250_m2_e1	*	59.7641	63.1579	56.7164	96.7476	72	42	76	58	33	56.8966
anovak-vg	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_11to50	homalt	67.1212	72.5490	62.4490	44.0639	111	42	306	184	163	88.5870
anovak-vg	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	97.9681	98.4772	97.4643	37.2197	2716	42	2729	71	52	73.2394
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.4684	98.9668	99.9751	45.9140	4023	42	4023	1	0	0.0000
asubramanian-gatk	INDEL	*	map_l100_m0_e0	homalt	95.2090	91.7485	98.9407	86.3268	467	42	467	5	2	40.0000
asubramanian-gatk	SNP	tv	map_siren	hetalt	65.0000	48.1481	100.0000	83.7500	39	42	39	0	0
bgallagher-sentieon	INDEL	*	map_siren	het	98.7628	99.0683	98.4592	83.3559	4466	42	4473	70	8	11.4286
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6716	99.6463	99.6968	50.6032	11833	42	11838	36	19	52.7778
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	94.4987	91.5493	97.6445	76.0021	455	42	456	11	11	100.0000
bgallagher-sentieon	SNP	tv	map_l250_m2_e0	*	98.1510	98.5427	97.7625	89.3375	2840	42	2840	65	13	20.0000
bgallagher-sentieon	SNP	tv	map_l250_m2_e1	*	98.1725	98.5597	97.7884	89.4056	2874	42	2874	65	13	20.0000
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.1247	99.5589	96.7314	45.9773	9479	42	9470	320	309	96.5625
eyeh-varpipe	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	65.3933	98.2278	49.0105	39.1883	2328	42	2328	2422	2406	99.3394
eyeh-varpipe	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	74.5342	62.5000	92.3077	80.9663	70	42	120	10	9	90.0000
eyeh-varpipe	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	hetalt	46.3980	31.1475	90.9091	61.1765	19	42	30	3	3	100.0000
gduggal-bwavard	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	43.5897	28.8136	89.4737	70.7692	17	42	17	2	2	100.0000
gduggal-bwavard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	70.4225	54.3478	100.0000	51.0204	50	42	48	0	0
gduggal-bwavard	SNP	*	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	42	0	0	0
gduggal-bwavard	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	93.9379	89.0339	99.4135	76.1872	341	42	339	2	2	100.0000
gduggal-bwavard	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	98.4421	98.3051	98.5795	46.6205	2436	42	2429	35	6	17.1429
gduggal-bwavard	SNP	tv	map_l100_m2_e0	hetalt		0.0000	0.0000	0.0000	0	42	0	0	0
gduggal-bwafb	INDEL	D16_PLUS	map_l100_m2_e0	*	66.6667	53.3333	88.8889	86.2595	48	42	48	6	6	100.0000
eyeh-varpipe	INDEL	I6_15	segdup	*	81.1709	76.0000	87.0968	88.6197	133	42	135	20	20	100.0000
gduggal-bwaplat	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	homalt	74.0741	58.8235	100.0000	75.2066	60	42	60	0	0
gduggal-bwavard	INDEL	*	map_l100_m1_e0	het	89.9219	98.1208	82.9876	89.4070	2193	42	2200	451	184	40.7982
gduggal-bwavard	INDEL	*	map_l125_m0_e0	*	88.9737	95.2381	83.4826	91.4946	840	42	839	166	31	18.6747
gduggal-bwavard	INDEL	*	map_l125_m2_e1	hetalt	0.0000	2.3256	0.0000	0.0000	1	42	0	0	0
gduggal-bwavard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	het	22.0217	71.6216	13.0112	43.9194	106	42	105	702	699	99.5726
gduggal-bwaplat	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_gt10	*	40.1003	26.3158	84.2105	99.8551	15	42	16	3	0	0.0000
egarrison-hhga	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.4927	96.2865	98.7296	42.4242	1089	42	1088	14	12	85.7143
egarrison-hhga	SNP	*	map_l150_m1_e0	homalt	99.7690	99.6274	99.9110	70.9129	11231	42	11231	10	10	100.0000
egarrison-hhga	SNP	*	map_l150_m2_e0	homalt	99.7775	99.6410	99.9143	73.3265	11657	42	11657	10	10	100.0000
egarrison-hhga	SNP	*	map_l150_m2_e1	homalt	99.7799	99.6449	99.9152	73.3597	11785	42	11785	10	10	100.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	93.0003	88.7701	97.6540	47.5385	332	42	333	8	2	25.0000
ckim-isaac	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	93.4330	91.3758	95.5850	59.8048	445	42	433	20	5	25.0000
ckim-isaac	INDEL	D6_15	map_l125_m1_e0	het	50.5747	34.3750	95.6522	94.4175	22	42	22	1	1	100.0000
ckim-vqsr	SNP	tv	*	hetalt	97.4148	95.1780	99.7593	54.6645	829	42	829	2	2	100.0000
ckim-vqsr	SNP	tv	HG002compoundhet	hetalt	97.5030	95.1276	100.0000	23.3645	820	42	820	0	0
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	98.4732	97.1869	99.7941	31.3060	1451	42	1454	3	3	100.0000

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