PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64651-64700 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | het | 98.5037 | 98.2501 | 98.7586 | 83.8596 | 2302 | 41 | 2307 | 29 | 5 | 17.2414 | |
| hfeng-pmm2 | INDEL | * | HG002complexvar | homalt | 99.7542 | 99.8483 | 99.6603 | 56.1296 | 26986 | 41 | 26994 | 92 | 86 | 93.4783 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4122 | 99.6041 | 99.2209 | 44.4011 | 10316 | 41 | 10316 | 81 | 79 | 97.5309 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | * | 99.0651 | 99.0177 | 99.1125 | 80.0536 | 4133 | 41 | 4132 | 37 | 3 | 8.1081 | |
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | * | 98.7121 | 98.4511 | 98.9746 | 87.8091 | 2606 | 41 | 2606 | 27 | 4 | 14.8148 | |
| jlack-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9617 | 96.7357 | 97.1888 | 78.6888 | 1215 | 41 | 1210 | 35 | 17 | 48.5714 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 95.9795 | 98.7477 | 93.3623 | 66.3775 | 3233 | 41 | 3221 | 229 | 194 | 84.7162 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.0630 | 95.6476 | 98.5210 | 73.1357 | 901 | 41 | 866 | 13 | 7 | 53.8462 | |
| raldana-dualsentieon | SNP | * | map_l125_m0_e0 | homalt | 99.6192 | 99.3892 | 99.8503 | 65.6627 | 6671 | 41 | 6671 | 10 | 7 | 70.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 84.5155 | 93.8346 | 76.8802 | 80.7197 | 624 | 41 | 552 | 166 | 157 | 94.5783 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 59.9292 | 69.6296 | 52.6012 | 68.2569 | 94 | 41 | 91 | 82 | 79 | 96.3415 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002compoundhet | het | 81.9000 | 89.8765 | 75.2239 | 57.3791 | 364 | 41 | 252 | 83 | 82 | 98.7952 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.7009 | 93.6842 | 87.9017 | 84.8598 | 623 | 42 | 465 | 64 | 59 | 92.1875 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002compoundhet | het | 54.9434 | 79.8077 | 41.8919 | 76.8894 | 166 | 42 | 155 | 215 | 211 | 98.1395 | |
| rpoplin-dv42 | SNP | * | map_l250_m0_e0 | het | 97.3404 | 97.2112 | 97.4700 | 92.1200 | 1464 | 42 | 1464 | 38 | 23 | 60.5263 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5094 | 99.3762 | 99.6429 | 67.2531 | 6691 | 42 | 6696 | 24 | 19 | 79.1667 | |
| rpoplin-dv42 | INDEL | * | map_l125_m1_e0 | het | 97.5874 | 96.8539 | 98.3321 | 86.1464 | 1293 | 42 | 1297 | 22 | 7 | 31.8182 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | het | 97.6497 | 97.6497 | 97.6497 | 86.6731 | 1745 | 42 | 1745 | 42 | 26 | 61.9048 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e0 | het | 97.8098 | 97.8351 | 97.7846 | 87.2638 | 1898 | 42 | 1898 | 43 | 27 | 62.7907 | |
| rpoplin-dv42 | SNP | tv | map_l250_m2_e1 | het | 97.8128 | 97.8626 | 97.7631 | 87.3293 | 1923 | 42 | 1923 | 44 | 28 | 63.6364 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8309 | 99.3772 | 98.2905 | 53.9062 | 6702 | 42 | 6727 | 117 | 6 | 5.1282 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 59.0289 | 42.4658 | 96.7742 | 72.0721 | 31 | 42 | 30 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 43.6519 | 28.8136 | 90.0000 | 80.0000 | 17 | 42 | 18 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5982 | 96.9186 | 98.2874 | 71.4134 | 1321 | 42 | 1320 | 23 | 20 | 86.9565 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 82.4534 | 76.4045 | 89.5425 | 70.1754 | 136 | 42 | 137 | 16 | 16 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.2500 | 97.3962 | 99.1189 | 63.9192 | 1571 | 42 | 1575 | 14 | 1 | 7.1429 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.9898 | 94.4882 | 95.4967 | 65.8834 | 720 | 42 | 721 | 34 | 23 | 67.6471 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.5369 | 96.2865 | 98.8203 | 42.9016 | 1089 | 42 | 1089 | 13 | 9 | 69.2308 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.6585 | 93.5681 | 91.7665 | 71.7189 | 611 | 42 | 613 | 55 | 44 | 80.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4251 | 70.6294 | 96.1165 | 91.5574 | 101 | 42 | 99 | 4 | 3 | 75.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6457 | 99.4290 | 99.8635 | 32.0123 | 7313 | 42 | 7315 | 10 | 4 | 40.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8196 | 92.1495 | 99.7942 | 70.9504 | 493 | 42 | 485 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.3930 | 81.0811 | 81.7073 | 53.8028 | 180 | 42 | 268 | 60 | 33 | 55.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 73.8152 | 89.0909 | 63.0112 | 55.9378 | 343 | 42 | 339 | 199 | 180 | 90.4523 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.4259 | 96.9186 | 95.9382 | 41.0474 | 1321 | 42 | 12117 | 513 | 483 | 94.1520 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6205 | 96.5909 | 98.6722 | 61.1039 | 1190 | 42 | 1189 | 16 | 15 | 93.7500 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.6268 | 98.9870 | 98.2693 | 80.7168 | 4104 | 42 | 4145 | 73 | 1 | 1.3699 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m1_e0 | het | 96.9589 | 95.0877 | 98.9051 | 82.3832 | 813 | 42 | 813 | 9 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | * | map_l150_m0_e0 | * | 92.9134 | 91.8288 | 94.0239 | 93.2052 | 472 | 42 | 472 | 30 | 20 | 66.6667 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | * | 59.8250 | 53.3333 | 68.1159 | 96.2743 | 48 | 42 | 47 | 22 | 19 | 86.3636 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3549 | 93.6842 | 93.0279 | 84.8155 | 623 | 42 | 467 | 35 | 31 | 88.5714 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5621 | 93.6267 | 99.6875 | 66.3512 | 617 | 42 | 638 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5621 | 93.6267 | 99.6875 | 66.3512 | 617 | 42 | 638 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l100_m0_e0 | * | 94.2615 | 92.2652 | 96.3462 | 85.0575 | 501 | 42 | 501 | 19 | 12 | 63.1579 | |
| jpowers-varprowl | SNP | * | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 96.7965 | 98.7069 | 94.9587 | 77.6519 | 3206 | 42 | 3221 | 171 | 34 | 19.8830 | |
| jpowers-varprowl | SNP | tv | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3962 | 98.9698 | 99.8262 | 37.7685 | 4035 | 42 | 4020 | 7 | 2 | 28.5714 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | het | 96.1235 | 98.1795 | 94.1518 | 90.6489 | 2265 | 42 | 2270 | 141 | 14 | 9.9291 | |