PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64351-64400 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.4355 | 91.8750 | 97.1429 | 81.8436 | 441 | 39 | 442 | 13 | 12 | 92.3077 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.0154 | 89.1967 | 99.3846 | 57.7373 | 322 | 39 | 323 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.7339 | 69.2913 | 96.7033 | 44.5122 | 88 | 39 | 88 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 84.2857 | 75.1592 | 95.9350 | 54.2751 | 118 | 39 | 118 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | het | 28.2353 | 18.7500 | 57.1429 | 94.4444 | 9 | 39 | 8 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.9368 | 91.0345 | 92.8571 | 60.6373 | 396 | 39 | 390 | 30 | 18 | 60.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m0_e0 | het | 51.2195 | 35.0000 | 95.4545 | 93.0380 | 21 | 39 | 21 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 75.8539 | 63.8889 | 93.3333 | 73.2143 | 69 | 39 | 70 | 5 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 89.1967 | 80.5000 | 100.0000 | 50.1548 | 161 | 39 | 161 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.0727 | 94.3231 | 97.8884 | 82.5020 | 648 | 39 | 649 | 14 | 11 | 78.5714 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.3829 | 99.4334 | 99.3324 | 81.4625 | 6844 | 39 | 6844 | 46 | 14 | 30.4348 | |
| dgrover-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.5765 | 99.8591 | 99.2956 | 64.7620 | 27639 | 39 | 27629 | 196 | 19 | 9.6939 | |
| dgrover-gatk | SNP | tv | map_l250_m1_e0 | het | 97.6809 | 97.8176 | 97.5446 | 90.8347 | 1748 | 39 | 1748 | 44 | 8 | 18.1818 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e0 | het | 97.7378 | 97.9897 | 97.4872 | 91.2583 | 1901 | 39 | 1901 | 49 | 9 | 18.3673 | |
| dgrover-gatk | SNP | tv | map_l250_m2_e1 | het | 97.7665 | 98.0153 | 97.5190 | 91.3080 | 1926 | 39 | 1926 | 49 | 9 | 18.3673 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 85.0092 | 76.6467 | 95.4198 | 68.8095 | 128 | 39 | 125 | 6 | 5 | 83.3333 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8822 | 98.9362 | 98.8283 | 47.8545 | 3627 | 39 | 3627 | 43 | 30 | 69.7674 | |
| egarrison-hhga | INDEL | D1_5 | map_l100_m2_e1 | * | 98.0898 | 97.9887 | 98.1912 | 83.7299 | 1900 | 39 | 1900 | 35 | 13 | 37.1429 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.6582 | 93.5323 | 95.8115 | 68.9767 | 564 | 39 | 549 | 24 | 14 | 58.3333 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.1088 | 57.6087 | 96.3636 | 60.1449 | 53 | 39 | 53 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m1_e0 | homalt | 99.8579 | 99.7829 | 99.9331 | 60.2302 | 17921 | 39 | 17921 | 12 | 12 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e0 | homalt | 99.8579 | 99.7870 | 99.9289 | 62.7872 | 18270 | 39 | 18270 | 13 | 13 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l100_m2_e1 | homalt | 99.8593 | 99.7891 | 99.9296 | 62.7744 | 18455 | 39 | 18455 | 13 | 13 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l250_m0_e0 | * | 98.2288 | 97.1533 | 99.3284 | 92.7300 | 1331 | 39 | 1331 | 9 | 3 | 33.3333 | |
| eyeh-varpipe | INDEL | * | map_l100_m0_e0 | het | 96.6024 | 96.1802 | 97.0283 | 84.1962 | 982 | 39 | 1404 | 43 | 23 | 53.4884 | |
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 61.6652 | 61.3861 | 61.9469 | 89.2176 | 62 | 39 | 70 | 43 | 11 | 25.5814 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4518 | 99.2381 | 99.6663 | 75.2850 | 5080 | 39 | 5078 | 17 | 10 | 58.8235 | |
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | het | 95.8049 | 96.1802 | 95.4325 | 92.0387 | 982 | 39 | 982 | 47 | 3 | 6.3830 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.5553 | 95.3380 | 99.8782 | 41.5658 | 818 | 40 | 820 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.7121 | 90.9707 | 98.7745 | 28.0423 | 403 | 40 | 403 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D6_15 | map_siren | hetalt | 74.2364 | 59.5960 | 98.4127 | 73.9669 | 59 | 40 | 62 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.4645 | 92.7140 | 94.2272 | 74.8006 | 509 | 40 | 506 | 31 | 19 | 61.2903 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m2_e0 | * | 96.7133 | 96.5004 | 96.9271 | 91.1664 | 1103 | 40 | 1104 | 35 | 5 | 14.2857 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2821 | 93.1389 | 99.6448 | 63.2266 | 543 | 40 | 561 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m1_e0 | het | 96.5955 | 94.8520 | 98.4043 | 89.8378 | 737 | 40 | 740 | 12 | 1 | 8.3333 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.0377 | 88.9807 | 99.7041 | 43.6667 | 323 | 40 | 337 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.1194 | 98.7685 | 99.4729 | 66.0097 | 3208 | 40 | 3208 | 17 | 8 | 47.0588 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5262 | 99.3991 | 99.6536 | 77.7226 | 6617 | 40 | 6617 | 23 | 9 | 39.1304 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4469 | 98.9759 | 99.9224 | 33.5509 | 3866 | 40 | 3865 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.3469 | 96.9970 | 97.6994 | 59.7282 | 1292 | 40 | 1274 | 30 | 17 | 56.6667 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.9065 | 89.6373 | 94.2935 | 88.6839 | 346 | 40 | 347 | 21 | 14 | 66.6667 | |
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.3636 | 98.0237 | 98.7058 | 69.2437 | 1984 | 40 | 1983 | 26 | 6 | 23.0769 | |
| dgrover-gatk | SNP | * | map_l250_m0_e0 | het | 97.2149 | 97.3440 | 97.0861 | 94.4551 | 1466 | 40 | 1466 | 44 | 7 | 15.9091 | |
| dgrover-gatk | SNP | tv | map_l150_m1_e0 | homalt | 99.4146 | 98.9863 | 99.8466 | 69.3080 | 3906 | 40 | 3906 | 6 | 4 | 66.6667 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e0 | homalt | 99.4343 | 99.0203 | 99.8518 | 71.6158 | 4043 | 40 | 4043 | 6 | 4 | 66.6667 | |
| dgrover-gatk | SNP | tv | map_l150_m2_e1 | homalt | 99.4413 | 99.0324 | 99.8537 | 71.5870 | 4094 | 40 | 4094 | 6 | 4 | 66.6667 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.2513 | 95.6140 | 94.8913 | 62.4643 | 872 | 40 | 873 | 47 | 32 | 68.0851 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.3115 | 93.4534 | 63.0682 | 57.8947 | 571 | 40 | 666 | 390 | 384 | 98.4615 | |
| mlin-fermikit | INDEL | D1_5 | segdup | * | 97.1654 | 96.3735 | 97.9705 | 92.4302 | 1063 | 40 | 1062 | 22 | 19 | 86.3636 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | * | 67.1440 | 61.1650 | 74.4186 | 83.6190 | 63 | 40 | 64 | 22 | 14 | 63.6364 | |