PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
64101-64150 / 86044 show all | |||||||||||||||
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5926 | 96.9745 | 98.2186 | 79.0180 | 1218 | 38 | 1213 | 22 | 9 | 40.9091 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.2792 | 97.5341 | 99.0358 | 68.7742 | 1503 | 38 | 1438 | 14 | 3 | 21.4286 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.5263 | 90.1554 | 97.1591 | 89.2157 | 348 | 38 | 342 | 10 | 1 | 10.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.5123 | 99.0294 | 100.0000 | 77.4811 | 3877 | 38 | 3896 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | map_l100_m0_e0 | homalt | 95.3441 | 92.5344 | 98.3299 | 81.7524 | 471 | 38 | 471 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | * | map_l150_m2_e0 | homalt | 95.3714 | 92.0998 | 98.8839 | 87.1375 | 443 | 38 | 443 | 5 | 3 | 60.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.3841 | 93.4028 | 82.0941 | 65.3887 | 538 | 38 | 541 | 118 | 116 | 98.3051 | |
| ltrigg-rtg1 | INDEL | * | map_l150_m0_e0 | het | 93.3791 | 88.8563 | 98.3871 | 82.7873 | 303 | 38 | 305 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | HG002compoundhet | het | 94.1181 | 90.6173 | 97.9003 | 50.1961 | 367 | 38 | 373 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 97.6113 | 96.0375 | 99.2375 | 61.0025 | 921 | 38 | 911 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8080 | 99.6266 | 99.9901 | 51.1176 | 10140 | 38 | 10103 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.5154 | 97.1471 | 99.9228 | 63.2207 | 1294 | 38 | 1294 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.1415 | 83.9662 | 92.7536 | 39.4737 | 199 | 38 | 64 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | * | map_l100_m0_e0 | homalt | 94.7686 | 92.5344 | 97.1134 | 82.2993 | 471 | 38 | 471 | 14 | 5 | 35.7143 | |
| ghariani-varprowl | INDEL | * | map_l150_m2_e0 | homalt | 94.8608 | 92.0998 | 97.7925 | 87.5618 | 443 | 38 | 443 | 10 | 3 | 30.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 95.5771 | 92.0998 | 99.3274 | 67.6812 | 443 | 38 | 443 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | homalt | 92.1348 | 86.6197 | 98.4000 | 84.7437 | 246 | 38 | 369 | 6 | 4 | 66.6667 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 20.4082 | 11.6279 | 83.3333 | 78.5714 | 5 | 38 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | * | 70.7555 | 70.3125 | 71.2042 | 85.5303 | 90 | 38 | 136 | 55 | 37 | 67.2727 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 36.6667 | 0.0000 | 0.0000 | 22 | 38 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | * | 96.0014 | 96.6754 | 95.3368 | 86.9241 | 1105 | 38 | 1104 | 54 | 9 | 16.6667 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e1 | * | 96.0083 | 96.7156 | 95.3112 | 86.9753 | 1119 | 38 | 1118 | 55 | 9 | 16.3636 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 59.4318 | 53.0864 | 67.5000 | 54.5455 | 43 | 38 | 54 | 26 | 25 | 96.1538 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 60.0000 | 44.1176 | 93.7500 | 72.6496 | 30 | 38 | 30 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 48.6558 | 37.7049 | 68.5714 | 84.9138 | 23 | 38 | 24 | 11 | 10 | 90.9091 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | * | 94.5107 | 95.4217 | 93.6170 | 89.0315 | 792 | 38 | 792 | 54 | 19 | 35.1852 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m1_e0 | * | 72.3810 | 66.6667 | 79.1667 | 87.9093 | 76 | 38 | 76 | 20 | 16 | 80.0000 | |
| ghariani-varprowl | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9611 | 99.4586 | 96.5079 | 63.7151 | 6981 | 38 | 6992 | 253 | 3 | 1.1858 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.1793 | 98.7333 | 99.6293 | 74.5125 | 2962 | 38 | 2956 | 11 | 2 | 18.1818 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.7723 | 96.7851 | 94.7804 | 58.3362 | 1144 | 38 | 1144 | 63 | 61 | 96.8254 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.2378 | 37.7049 | 85.0000 | 51.2195 | 23 | 38 | 17 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | * | map_l100_m0_e0 | homalt | 95.5388 | 92.5344 | 98.7448 | 78.4685 | 471 | 38 | 472 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.6411 | 76.8293 | 30.4762 | 68.5864 | 126 | 38 | 128 | 292 | 286 | 97.9452 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 19.5122 | 17.3913 | 22.2222 | 55.5556 | 8 | 38 | 8 | 28 | 27 | 96.4286 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | * | 92.6484 | 96.6754 | 88.9435 | 89.1467 | 1105 | 38 | 1086 | 135 | 19 | 14.0741 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 72.6802 | 97.7039 | 57.8610 | 56.5116 | 1617 | 38 | 1623 | 1182 | 1138 | 96.2775 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.9869 | 88.4848 | 29.2683 | 52.5554 | 292 | 38 | 288 | 696 | 682 | 97.9885 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 41.8118 | 28.3019 | 80.0000 | 60.9375 | 15 | 38 | 20 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 50.5495 | 37.7049 | 76.6667 | 71.4286 | 23 | 38 | 23 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 88.1679 | 84.2975 | 92.4107 | 60.6327 | 204 | 38 | 207 | 17 | 16 | 94.1176 | |
| gduggal-bwafb | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.6683 | 98.8300 | 92.7026 | 77.7557 | 3210 | 38 | 3214 | 253 | 21 | 8.3004 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | homalt | 99.2528 | 98.6237 | 99.8899 | 77.4057 | 2723 | 38 | 2723 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 82.0755 | 69.6000 | 100.0000 | 36.4964 | 87 | 38 | 87 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.6524 | 97.4079 | 99.9291 | 42.5020 | 1428 | 38 | 1410 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 39.7351 | 28.3019 | 66.6667 | 55.4455 | 15 | 38 | 30 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 40.4915 | 37.7049 | 43.7229 | 36.0111 | 23 | 38 | 101 | 130 | 128 | 98.4615 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 64.8148 | 47.9452 | 100.0000 | 90.3315 | 35 | 38 | 35 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 51.8519 | 35.5932 | 95.4545 | 76.8421 | 21 | 38 | 21 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 72.0497 | 90.1554 | 60.0000 | 90.1623 | 348 | 38 | 291 | 194 | 26 | 13.4021 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002complexvar | homalt | 81.9487 | 86.8512 | 77.5701 | 62.8472 | 251 | 38 | 249 | 72 | 72 | 100.0000 | |