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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1263 1264 1265 1266 1267 1268 1269 1270 1271 ... 1720 1721 » 63301-63350 / 86044 show all
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.7724	88.0435	93.6759	87.8424	243	33	237	16	1	6.2500
gduggal-snapfb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	95.0667	91.9708	98.3784	71.2062	378	33	364	6	5	83.3333
gduggal-snapfb	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	70.7005	95.7309	56.0463	69.8866	740	33	774	607	47	7.7430
gduggal-snapfb	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	73.5213	72.9508	74.1007	51.5679	89	33	103	36	31	86.1111
gduggal-snapplat	INDEL	*	map_l125_m2_e1	hetalt	36.9610	23.2558	90.0000	99.0548	10	33	9	1	1	100.0000
gduggal-snapplat	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	34.4828	23.2558	66.6667	81.2500	10	33	6	3	2	66.6667
ghariani-varprowl	INDEL	*	map_l100_m0_e0	hetalt		0.0000	0.0000	0.0000	0	33	0	0	0
ghariani-varprowl	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	51.7650	93.7381	35.7550	67.8055	494	33	502	902	894	99.1131
ghariani-varprowl	INDEL	D1_5	segdup	homalt	94.4928	90.8078	98.4894	93.1837	326	33	326	5	4	80.0000
gduggal-snapvard	INDEL	D16_PLUS	map_siren	homalt	5.7143	2.9412	100.0000	92.8571	1	33	1	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	15.3846	8.3333	100.0000	73.3333	3	33	4	0	0
gduggal-snapvard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	92.1761	97.7083	87.2368	73.1862	1407	33	1367	200	4	2.0000
ghariani-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	86.9792	83.5000	90.7609	61.7464	167	33	167	17	13	76.4706
ghariani-varprowl	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	89.0162	97.8232	81.6639	77.4026	1483	33	1492	335	22	6.5672
ghariani-varprowl	SNP	tv	map_l250_m1_e0	homalt	97.7435	96.1449	99.3961	88.8575	823	33	823	5	1	20.0000
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.2125	91.3158	99.4565	63.2368	347	33	366	2	2	100.0000
bgallagher-sentieon	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	99.0536	98.9058	99.2019	69.0574	2983	33	2983	24	5	20.8333
bgallagher-sentieon	SNP	*	map_l250_m0_e0	*	97.7220	98.4543	97.0005	93.1217	2102	33	2102	65	12	18.4615
bgallagher-sentieon	SNP	ti	map_l250_m2_e1	het	98.2995	98.9997	97.6091	90.8150	3266	33	3266	80	16	20.0000
anovak-vg	INDEL	I1_5	func_cds	het	53.0612	44.0678	66.6667	45.0704	26	33	26	13	3	23.0769
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	64.4166	93.0962	49.2457	68.6592	445	33	457	471	445	94.4798
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	0.0000	45.0000	0.0000	0.0000	27	33	0	0	0
anovak-vg	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	64.1521	78.2895	54.3396	87.4882	119	33	144	121	38	31.4050
anovak-vg	INDEL	*	tech_badpromoters	*	66.4036	56.5789	80.3571	44.5545	43	33	45	11	10	90.9091
anovak-vg	INDEL	D16_PLUS	map_siren	het	65.2174	57.6923	75.0000	77.5439	45	33	48	16	13	81.2500
anovak-vg	INDEL	D1_5	map_l100_m1_e0	hetalt	0.0000	29.7872	0.0000	0.0000	14	33	0	0	0
anovak-vg	INDEL	D1_5	map_l100_m2_e0	hetalt	0.0000	31.2500	0.0000	0.0000	15	33	0	0	0
anovak-vg	INDEL	D6_15	map_l100_m2_e1	het	75.1170	75.5556	74.6835	86.0301	102	33	118	40	23	57.5000
anovak-vg	INDEL	D6_15	map_l125_m2_e0	*	76.3127	73.8095	78.9916	88.9713	93	33	94	25	15	60.0000
anovak-vg	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	0.0000	5.7143	0.0000	0.0000	2	33	0	0	0
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	97.7580	97.6793	97.8367	88.4863	1389	33	1402	31	10	32.2581
asubramanian-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.3981	98.8035	100.0000	36.3869	2725	33	2729	0	0
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	hetalt	97.6197	95.7908	99.5198	33.5726	751	33	829	4	4	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.7884	96.1222	99.5134	88.6370	818	33	818	4	4	100.0000
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	98.3923	97.0109	99.8136	86.7219	1071	33	1071	2	2	100.0000
asubramanian-gatk	INDEL	*	segdup	het	98.2193	97.7490	98.6942	95.9225	1433	33	1436	19	2	10.5263
asubramanian-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	*	95.7178	94.6429	96.8174	68.4294	583	33	578	19	17	89.4737
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.4934	99.1237	95.9157	59.7456	3733	33	3734	159	146	91.8239
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.4934	99.1237	95.9157	59.7456	3733	33	3734	159	146	91.8239
asubramanian-gatk	INDEL	I16_PLUS	HG002complexvar	het	97.3776	95.0376	99.8358	65.4566	632	33	608	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.4850	97.5225	97.4474	70.6155	1299	33	1298	34	32	94.1176
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8787	99.8366	99.9207	56.8327	20166	33	20166	16	7	43.7500
raldana-dualsentieon	INDEL	I1_5	map_siren	het	98.5075	98.0369	98.9826	78.7269	1648	33	1654	17	1	5.8824
egarrison-hhga	INDEL	D6_15	map_l100_m2_e1	*	90.1715	88.0000	92.4528	85.4555	242	33	245	20	12	60.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	98.0772	97.3214	98.8449	61.5726	1199	33	1198	14	12	85.7143
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	97.4468	99.1471	95.8038	68.8013	3836	33	3790	166	160	96.3855
ckim-isaac	INDEL	D16_PLUS	lowcmp_SimpleRepeat_quadTR_51to200	homalt	80.7018	67.6471	100.0000	53.9474	69	33	70	0	0
ckim-isaac	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	85.8676	81.3559	90.9091	64.8402	144	33	140	14	3	21.4286
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	*	98.0772	97.3214	98.8449	61.2532	1199	33	1198	14	12	85.7143
ckim-vqsr	INDEL	D1_5	map_l125_m2_e0	het	95.6835	95.6806	95.6863	92.2445	731	33	732	33	3	9.0909

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