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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1262 1263 1264 1265 1266 1267 1268 1269 1270 ... 1720 1721 » 63251-63300 / 86044 show all
ltrigg-rtg1	SNP	ti	map_l150_m2_e1	homalt	99.7136	99.5710	99.8566	72.6687	7660	33	7662	11	11	100.0000
ltrigg-rtg1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.7967	99.6732	99.9204	57.8106	10064	33	10047	8	2	25.0000
jpowers-varprowl	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	87.2063	83.5000	91.2568	61.1465	167	33	167	16	13	81.2500
jpowers-varprowl	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	90.1734	87.6404	92.8571	52.1822	234	33	234	18	13	72.2222
ltrigg-rtg1	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	97.4933	95.4980	99.5739	64.9402	700	33	701	3	3	100.0000
jli-custom	INDEL	D1_5	map_siren	*	99.1919	99.0649	99.3191	79.7902	3496	33	3501	24	8	33.3333
jli-custom	INDEL	*	map_l100_m0_e0	*	97.9520	97.8887	98.0154	84.8379	1530	33	1531	31	10	32.2581
hfeng-pmm2	SNP	ti	segdup	het	99.5229	99.7257	99.3210	90.4269	11997	33	11995	82	0	0.0000
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4759	99.0435	99.9122	35.7223	3417	33	3414	3	0	0.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	98.2210	96.5042	100.0000	31.7460	911	33	989	0	0
hfeng-pmm1	INDEL	I1_5	map_siren	het	98.8017	98.0369	99.5786	80.1885	1648	33	1654	7	0	0.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7572	99.5298	99.9857	59.8113	6986	33	6983	1	0	0.0000
hfeng-pmm1	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.4759	99.0435	99.9122	35.0997	3417	33	3414	3	0	0.0000
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	97.7765	99.6055	96.0134	48.3178	8333	33	8333	346	344	99.4220
jlack-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7395	99.7766	99.7024	56.2348	14737	33	14739	44	17	38.6364
jlack-gatk	INDEL	I16_PLUS	HG002complexvar	hetalt	94.5436	90.1493	99.3884	68.8275	302	33	325	2	1	50.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	89.1599	90.8840	87.5000	82.4945	329	33	210	30	30	100.0000
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.5103	99.5446	99.4760	35.3827	7214	33	7214	38	38	100.0000
hfeng-pmm1	INDEL	D1_5	map_l125_m1_e0	*	98.0946	96.9669	99.2488	83.4909	1055	33	1057	8	1	12.5000
hfeng-pmm1	INDEL	D1_5	map_l125_m2_e0	*	98.1873	97.1129	99.2857	84.4854	1110	33	1112	8	1	12.5000
hfeng-pmm1	INDEL	D1_5	map_l125_m2_e1	*	98.2094	97.1478	99.2945	84.5735	1124	33	1126	8	1	12.5000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	97.2852	94.9924	99.6914	70.8502	626	33	646	2	2	100.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	97.2852	94.9924	99.6914	70.8502	626	33	646	2	2	100.0000
hfeng-pmm3	INDEL	I6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	75.1880	60.2410	100.0000	32.9412	50	33	57	0	0
hfeng-pmm3	SNP	ti	segdup	*	99.7137	99.8311	99.5965	88.9183	19504	33	19502	79	3	3.7975
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8394	99.6976	99.9816	59.7625	10878	33	10875	2	1	50.0000
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7572	99.5298	99.9857	59.9128	6986	33	6983	1	0	0.0000
ndellapenna-hhga	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	87.1751	86.5854	87.7729	84.1083	213	33	201	28	14	50.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	98.5727	97.6793	99.4826	83.5502	1389	33	1346	7	0	0.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.0022	98.7524	97.2633	81.0644	2612	33	2630	74	2	2.7027
ltrigg-rtg2	SNP	tv	segdup	*	98.9872	99.6132	98.3690	88.4663	8499	33	8504	141	21	14.8936
mlin-fermikit	INDEL	D1_5	map_siren	hetalt	75.5556	60.7143	100.0000	88.1119	51	33	51	0	0
mlin-fermikit	INDEL	D6_15	map_l150_m2_e0	*	67.7170	59.7561	78.1250	86.7769	49	33	50	14	10	71.4286
mlin-fermikit	INDEL	I1_5	map_l150_m0_e0	homalt	60.1770	50.7463	73.9130	82.8358	34	33	34	12	11	91.6667
mlin-fermikit	INDEL	I1_5	map_siren	hetalt	82.7225	70.5357	100.0000	83.1169	79	33	78	0	0
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.3026	99.5107	97.1234	41.8851	6712	33	6719	199	180	90.4523
qzeng-custom	INDEL	D1_5	map_l250_m2_e0	het	80.5528	72.7273	90.2655	98.0877	88	33	102	11	9	81.8182
qzeng-custom	INDEL	D1_5	map_l250_m2_e1	het	80.6897	72.9508	90.2655	98.1239	89	33	102	11	9	81.8182
qzeng-custom	SNP	*	func_cds	*	99.7598	99.8182	99.7016	28.7413	18117	33	18040	54	4	7.4074
qzeng-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	97.6562	98.9840	96.3636	77.0001	3215	33	3233	122	9	7.3771
qzeng-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.5593	97.6793	93.5294	90.1841	1389	33	1431	99	25	25.2525
ndellapenna-hhga	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	90.1073	88.5417	91.7293	71.7322	255	33	244	22	12	54.5455
ndellapenna-hhga	SNP	*	map_l150_m0_e0	homalt	99.5215	99.1930	99.8523	72.7346	4056	33	4056	6	5	83.3333
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_quadTR_51to200	*	79.0492	67.3267	95.7143	92.4812	68	33	67	3	3	100.0000
qzeng-custom	INDEL	*	map_l100_m2_e1	hetalt	85.7143	75.0000	100.0000	91.4013	99	33	27	0	0
ltrigg-rtg2	INDEL	D16_PLUS	HG002complexvar	hetalt	90.0287	86.6397	93.6937	56.8932	214	33	208	14	14	100.0000
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	homalt	84.6847	74.0157	98.9474	35.8108	94	33	94	1	1	100.0000
ltrigg-rtg2	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	88.5017	79.3750	100.0000	76.3916	127	33	123	0	0
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	91.0540	83.9806	99.4286	47.7612	173	33	174	1	1	100.0000
ltrigg-rtg2	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.0190	98.1121	99.9429	58.3888	1715	33	1750	1	1	100.0000

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