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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1261 1262 1263 1264 1265 1266 1267 1268 1269 ... 1720 1721 » 63201-63250 / 86044 show all
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6864	99.1226	98.2540	71.3658	3728	33	3714	66	64	96.9697
ckim-dragen	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6864	99.1226	98.2540	71.3658	3728	33	3714	66	64	96.9697
ckim-dragen	INDEL	I1_5	map_l100_m1_e0	het	96.1240	95.7529	96.4981	85.9049	744	33	744	27	3	11.1111
ckim-dragen	INDEL	I1_5	map_l100_m2_e0	het	96.2025	95.8386	96.5693	87.1089	760	33	760	27	3	11.1111
ckim-dragen	INDEL	I1_5	map_l100_m2_e1	het	96.2825	95.9259	96.6418	87.1729	777	33	777	27	3	11.1111
cchapple-custom	INDEL	D6_15	map_siren	*	94.5230	93.5167	95.5513	80.9225	476	33	494	23	10	43.4783
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	95.0216	93.3602	96.7433	74.7215	464	33	505	17	13	76.4706
gduggal-bwafb	INDEL	D1_5	map_l100_m1_e0	het	97.4816	97.2705	97.6936	82.4440	1176	33	1186	28	2	7.1429
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	77.5772	91.4508	67.3585	91.9490	353	33	357	173	20	11.5607
gduggal-bwafb	SNP	*	segdup	homalt	99.7625	99.6928	99.8322	89.4414	10710	33	10710	18	18	100.0000
eyeh-varpipe	SNP	*	map_l250_m1_e0	het	98.4331	99.3060	97.5755	90.8816	4722	33	4588	114	8	7.0175
eyeh-varpipe	SNP	*	map_l250_m2_e0	het	98.5164	99.3647	97.6826	91.1394	5161	33	5016	119	8	6.7227
eyeh-varpipe	SNP	*	map_l250_m2_e1	het	98.4883	99.3731	97.6190	91.2048	5231	33	5084	124	8	6.4516
eyeh-varpipe	INDEL	D1_5	map_l100_m2_e1	hetalt	50.4854	35.2941	88.6364	93.5007	18	33	39	5	3	60.0000
eyeh-varpipe	INDEL	D6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	45.2624	94.5183	29.7558	27.9326	569	33	585	1381	1290	93.4106
eyeh-varpipe	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	40.0000	25.0000	100.0000	79.5455	11	33	36	0	0
gduggal-bwavard	INDEL	*	map_l150_m2_e1	homalt	95.9235	93.2927	98.7069	84.9595	459	33	458	6	3	50.0000
gduggal-bwavard	INDEL	D1_5	map_l100_m0_e0	*	91.4210	96.1761	87.1140	87.8478	830	33	818	121	18	14.8760
gduggal-bwavard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	33	0	0	0
gduggal-bwavard	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	0.0000	5.7143	0.0000	0.0000	2	33	0	0	0
gduggal-snapfb	INDEL	*	map_l250_m2_e0	*	91.2711	90.0302	92.5466	95.8100	298	33	298	24	6	25.0000
gduggal-snapfb	INDEL	*	map_l250_m2_e1	*	91.3242	90.0901	92.5926	95.8878	300	33	300	24	6	25.0000
gduggal-snapfb	INDEL	*	segdup	hetalt	81.3718	74.6154	89.4737	97.2915	97	33	34	4	2	50.0000
gduggal-bwaplat	INDEL	*	segdup	hetalt	85.0838	74.6154	98.9691	96.9725	97	33	96	1	1	100.0000
gduggal-bwaplat	INDEL	D6_15	map_l150_m2_e1	*	75.9124	61.1765	100.0000	96.6858	52	33	52	0	0
gduggal-bwaplat	INDEL	D6_15	map_siren	homalt	85.4626	74.6154	100.0000	85.9216	97	33	97	0	0
gduggal-bwaplat	INDEL	I1_5	map_l250_m1_e0	het	62.0690	45.0000	100.0000	99.0193	27	33	27	0	0
gduggal-bwaplat	INDEL	I1_5	map_l250_m1_e0	homalt	40.0000	25.0000	100.0000	98.6453	11	33	11	0	0
gduggal-bwaplat	INDEL	I1_5	map_l250_m2_e0	homalt	42.1053	26.6667	100.0000	98.7487	12	33	12	0	0
gduggal-bwaplat	INDEL	I1_5	map_l250_m2_e1	homalt	44.0678	28.2609	100.0000	98.6762	13	33	13	0	0
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1246	99.5572	98.6958	41.6434	7419	33	7416	98	0	0.0000
jmaeng-gatk	SNP	tv	segdup	het	97.3848	99.3758	95.4719	95.8451	5254	33	5250	249	0	0.0000
jpowers-varprowl	INDEL	*	map_l100_m0_e0	hetalt		0.0000	0.0000	0.0000	0	33	0	0	0
jpowers-varprowl	INDEL	D1_5	segdup	homalt	94.4928	90.8078	98.4894	93.0154	326	33	326	5	4	80.0000
jli-custom	SNP	ti	HG002compoundhet	*	99.7826	99.8112	99.7541	35.5495	17445	33	17445	43	22	51.1628
jli-custom	SNP	tv	map_l100_m1_e0	homalt	99.7840	99.6351	99.9335	58.3614	9010	33	9010	6	5	83.3333
jmaeng-gatk	INDEL	*	HG002complexvar	homalt	99.7212	99.8779	99.5650	57.3567	26994	33	27007	118	111	94.0678
jmaeng-gatk	INDEL	D1_5	map_l100_m2_e1	*	96.9772	98.2981	95.6914	88.4517	1906	33	1910	86	8	9.3023
jmaeng-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.2111	91.3158	99.4536	61.2288	347	33	364	2	2	100.0000
jmaeng-gatk	INDEL	I1_5	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	96.3394	95.0151	97.7011	78.9127	629	33	595	14	7	50.0000
jmaeng-gatk	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	97.3579	94.8518	100.0000	40.3320	608	33	611	0	0
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.4749	99.2317	99.7192	49.7413	4262	33	4262	12	1	8.3333
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3050	98.9840	99.6281	65.8771	3215	33	3215	12	2	16.6667
ltrigg-rtg1	INDEL	D16_PLUS	HG002complexvar	hetalt	90.0802	86.6397	93.8053	58.5321	214	33	212	14	14	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.6201	99.3057	99.9365	31.9250	4720	33	4718	3	3	100.0000
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	het	99.1405	98.5558	99.7323	38.6532	2252	33	2235	6	1	16.6667
ltrigg-rtg1	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	het	88.5017	79.3750	100.0000	77.5510	127	33	121	0	0
ltrigg-rtg1	INDEL	I1_5	map_l125_m1_e0	*	97.6099	96.0241	99.2491	81.0529	797	33	793	6	1	16.6667
ltrigg-rtg1	SNP	ti	map_l150_m1_e0	homalt	99.6993	99.5496	99.8494	70.3647	7294	33	7295	11	11	100.0000
ltrigg-rtg1	SNP	ti	map_l150_m2_e0	homalt	99.7107	99.5667	99.8552	72.6188	7583	33	7584	11	11	100.0000

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