PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62101-62150 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 56.9052 | 57.5758 | 56.2500 | 83.0239 | 38 | 28 | 36 | 28 | 28 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e0 | het | 92.7393 | 90.9385 | 94.6128 | 92.4119 | 281 | 28 | 281 | 16 | 9 | 56.2500 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | het | 92.7769 | 91.1672 | 94.4444 | 92.4314 | 289 | 28 | 289 | 17 | 9 | 52.9412 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.9866 | 84.1808 | 72.6415 | 67.5841 | 149 | 28 | 154 | 58 | 58 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.7671 | 95.6318 | 100.0000 | 40.4831 | 613 | 28 | 616 | 0 | 0 | ||
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8284 | 99.7474 | 99.9096 | 58.5102 | 11056 | 28 | 11052 | 10 | 4 | 40.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4564 | 99.7391 | 99.1754 | 42.0292 | 10704 | 28 | 10704 | 89 | 2 | 2.2472 | |
| ckim-gatk | SNP | tv | segdup | het | 98.3440 | 99.4704 | 97.2428 | 95.8012 | 5259 | 28 | 5255 | 149 | 0 | 0.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 68.3574 | 93.6937 | 53.8071 | 85.3341 | 416 | 28 | 424 | 364 | 95 | 26.0989 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 78.7997 | 96.7251 | 66.4796 | 66.7555 | 827 | 28 | 829 | 418 | 3 | 0.7177 | |
| ckim-dragen | INDEL | * | map_siren | homalt | 98.9825 | 98.9454 | 99.0196 | 81.6305 | 2627 | 28 | 2626 | 26 | 15 | 57.6923 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4416 | 99.2346 | 99.6494 | 43.8167 | 3630 | 28 | 5401 | 19 | 13 | 68.4211 | |
| cchapple-custom | INDEL | * | map_siren | hetalt | 0.0000 | 88.6640 | 0.0000 | 0.0000 | 219 | 28 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | segdup | * | 99.1318 | 98.9045 | 99.3602 | 94.4519 | 2528 | 28 | 2640 | 17 | 10 | 58.8235 | |
| cchapple-custom | INDEL | D16_PLUS | * | homalt | 98.3125 | 98.3452 | 98.2800 | 59.3539 | 1664 | 28 | 1657 | 29 | 25 | 86.2069 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | * | 96.2312 | 96.7555 | 95.7126 | 83.6954 | 835 | 28 | 826 | 37 | 5 | 13.5135 | |
| ciseli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 54.2636 | 41.6667 | 77.7778 | 88.6076 | 20 | 28 | 21 | 6 | 3 | 50.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 28 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 33.6634 | 37.7778 | 30.3571 | 77.6000 | 17 | 28 | 17 | 39 | 34 | 87.1795 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 62.7651 | 58.8235 | 67.2727 | 64.5161 | 40 | 28 | 37 | 18 | 18 | 100.0000 | |
| ciseli-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 24.3902 | 15.1515 | 62.5000 | 94.2446 | 5 | 28 | 5 | 3 | 2 | 66.6667 | |
| ckim-dragen | SNP | tv | map_l100_m0_e0 | homalt | 99.4789 | 99.2720 | 99.6867 | 59.7308 | 3818 | 28 | 3818 | 12 | 10 | 83.3333 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.8445 | 97.7707 | 97.9183 | 79.2041 | 1228 | 28 | 1223 | 26 | 7 | 26.9231 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.1495 | 99.5808 | 98.7219 | 57.2055 | 6651 | 28 | 6643 | 86 | 83 | 96.5116 | |
| ckim-gatk | INDEL | D1_5 | map_siren | * | 98.1530 | 99.2066 | 97.1215 | 84.5697 | 3501 | 28 | 3509 | 104 | 9 | 8.6539 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.1591 | 97.0864 | 89.5372 | 74.7588 | 933 | 28 | 890 | 104 | 94 | 90.3846 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.4019 | 90.2778 | 98.9209 | 55.1854 | 260 | 28 | 825 | 9 | 7 | 77.7778 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.8248 | 96.2264 | 99.4772 | 49.0761 | 714 | 28 | 3235 | 17 | 15 | 88.2353 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6282 | 99.2848 | 99.9740 | 70.9201 | 3887 | 28 | 3839 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | * | map_l250_m0_e0 | homalt | 97.6442 | 95.5485 | 99.8339 | 90.2320 | 601 | 28 | 601 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | * | func_cds | homalt | 89.9834 | 87.6106 | 92.4883 | 28.5235 | 198 | 28 | 197 | 16 | 10 | 62.5000 | |
| ckim-dragen | INDEL | D1_5 | HG002compoundhet | het | 98.0379 | 98.3796 | 97.6985 | 74.2557 | 1700 | 28 | 1698 | 40 | 38 | 95.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.2063 | 99.6651 | 96.7896 | 65.1548 | 8332 | 28 | 8321 | 276 | 275 | 99.6377 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.2063 | 99.6651 | 96.7896 | 65.1548 | 8332 | 28 | 8321 | 276 | 275 | 99.6377 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | * | 95.4459 | 94.7269 | 96.1759 | 90.8774 | 503 | 28 | 503 | 20 | 5 | 25.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.5894 | 97.8804 | 99.3088 | 61.8852 | 1293 | 28 | 1293 | 9 | 7 | 77.7778 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.0605 | 98.2598 | 99.8745 | 43.2288 | 1581 | 28 | 1591 | 2 | 2 | 100.0000 | |
| ckim-dragen | SNP | * | map_l250_m2_e1 | homalt | 99.1340 | 98.9698 | 99.2986 | 84.0205 | 2690 | 28 | 2690 | 19 | 16 | 84.2105 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 74.0741 | 58.8235 | 100.0000 | 50.0000 | 40 | 28 | 38 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 12.5000 | 6.6667 | 100.0000 | 93.7500 | 2 | 28 | 2 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.9597 | 62.1622 | 94.3925 | 87.7434 | 46 | 28 | 101 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 32.0000 | 20.0000 | 80.0000 | 67.7419 | 7 | 28 | 8 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.8200 | 97.9622 | 99.6930 | 47.9840 | 1346 | 28 | 19485 | 60 | 60 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | segdup | hetalt | 56.8182 | 41.6667 | 89.2857 | 96.7175 | 20 | 28 | 25 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 83.2899 | 84.1808 | 82.4176 | 55.5375 | 149 | 28 | 225 | 48 | 45 | 93.7500 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.6316 | 99.0933 | 94.2892 | 74.2061 | 3060 | 28 | 3071 | 186 | 41 | 22.0430 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 74.7562 | 62.1622 | 93.7500 | 89.5879 | 46 | 28 | 45 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m0_e0 | * | 56.2500 | 39.1304 | 100.0000 | 99.3978 | 18 | 28 | 18 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.3047 | 95.1389 | 87.7676 | 60.8149 | 548 | 28 | 574 | 80 | 75 | 93.7500 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 71.6612 | 58.8235 | 91.6667 | 79.6610 | 40 | 28 | 11 | 1 | 1 | 100.0000 | |