PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
62051-62100 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 74.8782 | 61.6438 | 95.3488 | 77.1277 | 45 | 28 | 41 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.3738 | 95.1973 | 99.6522 | 66.4723 | 555 | 28 | 573 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 95.4319 | 93.2367 | 97.7330 | 74.4530 | 386 | 28 | 388 | 9 | 9 | 100.0000 | |
| dgrover-gatk | SNP | ti | map_l250_m2_e0 | homalt | 99.1074 | 98.3991 | 99.8260 | 86.5878 | 1721 | 28 | 1721 | 3 | 2 | 66.6667 | |
| dgrover-gatk | SNP | ti | map_l250_m2_e1 | homalt | 99.1191 | 98.4199 | 99.8283 | 86.6233 | 1744 | 28 | 1744 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | * | map_l150_m2_e0 | het | 97.4002 | 96.9095 | 97.8959 | 89.3401 | 878 | 28 | 884 | 19 | 5 | 26.3158 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.0643 | 93.0175 | 93.1111 | 72.1190 | 373 | 28 | 419 | 31 | 26 | 83.8710 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | * | 90.3148 | 89.3939 | 91.2548 | 85.9433 | 236 | 28 | 240 | 23 | 11 | 47.8261 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 94.9720 | 92.0000 | 98.1424 | 40.7339 | 322 | 28 | 317 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m2_e1 | * | 97.8495 | 96.4010 | 99.3421 | 82.5287 | 750 | 28 | 755 | 5 | 1 | 20.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2976 | 98.3558 | 98.2394 | 68.7282 | 1675 | 28 | 1674 | 30 | 5 | 16.6667 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.0353 | 98.9576 | 95.1862 | 61.9773 | 2658 | 28 | 2709 | 137 | 1 | 0.7299 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.2748 | 93.5927 | 70.2749 | 53.8827 | 409 | 28 | 409 | 173 | 173 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 72.0128 | 70.5263 | 73.5632 | 88.3378 | 67 | 28 | 64 | 23 | 19 | 82.6087 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.0506 | 91.1392 | 99.3127 | 70.7538 | 288 | 28 | 289 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | segdup | het | 95.8561 | 94.7955 | 96.9407 | 92.6504 | 510 | 28 | 507 | 16 | 12 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 92.8902 | 95.7121 | 90.2299 | 74.0007 | 625 | 28 | 628 | 68 | 67 | 98.5294 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 79.7299 | 67.0588 | 98.3051 | 62.1795 | 57 | 28 | 58 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 91.2698 | 88.4298 | 94.2982 | 65.0842 | 214 | 28 | 215 | 13 | 13 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 79.8653 | 67.0588 | 98.7179 | 91.2752 | 57 | 28 | 77 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 79.6385 | 80.2817 | 79.0055 | 39.4649 | 114 | 28 | 143 | 38 | 18 | 47.3684 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 86.6593 | 88.6640 | 84.7432 | 65.8939 | 219 | 28 | 561 | 101 | 76 | 75.2475 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | homalt | 99.6428 | 99.3765 | 99.9105 | 65.1370 | 4463 | 28 | 4463 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.5368 | 96.9631 | 98.1174 | 69.9601 | 894 | 28 | 886 | 17 | 14 | 82.3529 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.9699 | 84.9462 | 95.6250 | 69.2308 | 158 | 28 | 153 | 7 | 5 | 71.4286 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4850 | 99.2977 | 99.6730 | 35.9284 | 3959 | 28 | 3962 | 13 | 12 | 92.3077 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 87.3874 | 77.6000 | 100.0000 | 66.6667 | 97 | 28 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | * | map_l250_m0_e0 | * | 73.8916 | 64.1026 | 87.2093 | 99.0927 | 50 | 28 | 75 | 11 | 6 | 54.5455 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.7291 | 96.2264 | 99.2795 | 65.1606 | 714 | 28 | 689 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8395 | 99.7434 | 99.9357 | 57.3637 | 10883 | 28 | 10887 | 7 | 4 | 57.1429 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4778 | 99.2346 | 99.7223 | 46.3498 | 3630 | 28 | 3591 | 10 | 1 | 10.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m1_e0 | homalt | 98.6835 | 97.7180 | 99.6683 | 77.1071 | 1199 | 28 | 1202 | 4 | 2 | 50.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 69.8225 | 67.8161 | 71.9512 | 99.9249 | 59 | 28 | 59 | 23 | 15 | 65.2174 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.6782 | 96.9631 | 86.9396 | 76.4300 | 894 | 28 | 892 | 134 | 128 | 95.5224 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3133 | 97.9336 | 98.6960 | 78.2485 | 1327 | 28 | 1211 | 16 | 12 | 75.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.7127 | 92.2652 | 89.2116 | 81.5184 | 334 | 28 | 215 | 26 | 26 | 100.0000 | |
| jli-custom | INDEL | D1_5 | * | homalt | 99.8764 | 99.9428 | 99.8102 | 61.2620 | 48898 | 28 | 48904 | 93 | 90 | 96.7742 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 98.6673 | 98.5379 | 98.7971 | 83.0195 | 1887 | 28 | 1889 | 23 | 8 | 34.7826 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.7526 | 86.4078 | 97.8022 | 85.8034 | 178 | 28 | 178 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.0513 | 69.5652 | 100.0000 | 59.4937 | 64 | 28 | 64 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7677 | 99.7111 | 99.8244 | 68.3834 | 9664 | 28 | 9664 | 17 | 12 | 70.5882 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7449 | 99.5401 | 99.9505 | 54.6217 | 6060 | 28 | 6060 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.6456 | 96.2766 | 99.0541 | 57.2748 | 724 | 28 | 733 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m0_e0 | * | 96.8948 | 94.3548 | 99.5754 | 80.7834 | 468 | 28 | 469 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.9514 | 95.3488 | 98.6087 | 46.3119 | 574 | 28 | 567 | 8 | 6 | 75.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.5056 | 67.4419 | 96.8254 | 74.5968 | 58 | 28 | 61 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 72.3623 | 57.5758 | 97.3684 | 68.0672 | 38 | 28 | 37 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.2976 | 99.4123 | 99.1832 | 67.8581 | 4736 | 28 | 4736 | 39 | 8 | 20.5128 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.5047 | 99.5794 | 99.4300 | 77.4061 | 6629 | 28 | 6629 | 38 | 7 | 18.4211 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8303 | 99.7434 | 99.9174 | 59.7828 | 10883 | 28 | 10881 | 9 | 5 | 55.5556 | |