PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61901-61950 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.5382 | 68.9655 | 93.9394 | 75.0943 | 60 | 27 | 62 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.0491 | 96.8495 | 99.2788 | 82.1574 | 830 | 27 | 826 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l125_m2_e1 | * | 97.9652 | 96.8966 | 99.0577 | 82.2719 | 843 | 27 | 841 | 8 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.8242 | 95.3125 | 96.3415 | 60.8992 | 549 | 27 | 553 | 21 | 19 | 90.4762 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m0_e0 | * | 51.0018 | 42.5532 | 63.6364 | 88.1295 | 20 | 27 | 21 | 12 | 7 | 58.3333 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.3860 | 83.9286 | 84.8485 | 77.2727 | 141 | 27 | 140 | 25 | 23 | 92.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 87.7292 | 95.8398 | 80.8843 | 58.8109 | 622 | 27 | 622 | 147 | 141 | 95.9184 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m1_e0 | homalt | 53.1250 | 38.6364 | 85.0000 | 92.5094 | 17 | 27 | 17 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e0 | homalt | 54.5455 | 40.0000 | 85.7143 | 93.6937 | 18 | 27 | 18 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m2_e1 | homalt | 55.8824 | 41.3043 | 86.3636 | 93.6599 | 19 | 27 | 19 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | map_l150_m1_e0 | het | 97.3051 | 96.8421 | 97.7726 | 88.7274 | 828 | 27 | 834 | 19 | 5 | 26.3158 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | * | 90.3034 | 89.5349 | 91.0853 | 85.3075 | 231 | 27 | 235 | 23 | 11 | 47.8261 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.3928 | 87.7828 | 95.3125 | 88.4128 | 194 | 27 | 183 | 9 | 1 | 11.1111 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.5254 | 97.5543 | 99.5160 | 81.1874 | 1077 | 27 | 1028 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1764 | 99.1423 | 99.2106 | 64.9939 | 3121 | 27 | 3142 | 25 | 3 | 12.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e0 | homalt | 99.8261 | 99.7070 | 99.9456 | 61.2864 | 9187 | 27 | 9186 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m2_e1 | homalt | 99.8278 | 99.7097 | 99.9461 | 61.3020 | 9275 | 27 | 9274 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | D1_5 | HG002compoundhet | homalt | 41.8824 | 90.7216 | 27.2257 | 80.6916 | 264 | 27 | 263 | 703 | 687 | 97.7240 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.0394 | 97.9699 | 98.1089 | 39.1064 | 1303 | 27 | 1297 | 25 | 25 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 64.0000 | 47.0588 | 100.0000 | 89.0351 | 24 | 27 | 25 | 0 | 0 | ||
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.0232 | 87.7828 | 92.3810 | 89.6907 | 194 | 27 | 194 | 16 | 9 | 56.2500 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.3946 | 98.1976 | 98.5925 | 80.3787 | 1471 | 27 | 1471 | 21 | 19 | 90.4762 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.0268 | 98.8184 | 99.2361 | 41.7338 | 2258 | 27 | 2728 | 21 | 10 | 47.6190 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.8040 | 97.3134 | 96.2999 | 62.2704 | 978 | 27 | 989 | 38 | 13 | 34.2105 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 70.3297 | 54.2373 | 100.0000 | 61.4286 | 32 | 27 | 27 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 86.1163 | 83.9286 | 88.4211 | 59.0164 | 141 | 27 | 420 | 55 | 20 | 36.3636 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.5547 | 95.8398 | 93.3037 | 33.3744 | 622 | 27 | 2522 | 181 | 173 | 95.5801 | |
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 73.9161 | 59.7015 | 97.0149 | 91.4650 | 40 | 27 | 65 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 88.7013 | 84.8315 | 92.9412 | 72.5806 | 151 | 27 | 158 | 12 | 4 | 33.3333 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6888 | 99.5692 | 99.8086 | 46.3323 | 6241 | 27 | 6258 | 12 | 2 | 16.6667 | |
| gduggal-snapplat | SNP | tv | func_cds | het | 99.1144 | 98.9838 | 99.2453 | 45.4845 | 2630 | 27 | 2630 | 20 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | func_cds | het | 80.5822 | 87.3832 | 74.7634 | 51.0046 | 187 | 27 | 237 | 80 | 64 | 80.0000 | |
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | * | 77.4944 | 91.1475 | 67.3986 | 95.4162 | 278 | 27 | 399 | 193 | 44 | 22.7979 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 76.4847 | 93.7931 | 64.5692 | 72.8444 | 408 | 27 | 667 | 366 | 206 | 56.2842 | |
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 27 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D16_PLUS | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 27 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 27 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I1_5 | func_cds | het | 52.4590 | 54.2373 | 50.7937 | 72.0000 | 32 | 27 | 32 | 31 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 3.5714 | 0.0000 | 0.0000 | 1 | 27 | 0 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | func_cds | * | 99.5441 | 99.8512 | 99.2389 | 30.8362 | 18123 | 27 | 18123 | 139 | 14 | 10.0719 | |
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.8360 | 99.8663 | 95.8865 | 61.2690 | 20172 | 27 | 20210 | 867 | 535 | 61.7070 | |
| ghariani-varprowl | SNP | ti | map_l250_m0_e0 | het | 93.0734 | 97.1092 | 89.3596 | 95.1651 | 907 | 27 | 907 | 108 | 15 | 13.8889 | |
| hfeng-pmm1 | INDEL | * | map_l125_m0_e0 | het | 96.8885 | 95.4003 | 98.4238 | 87.4146 | 560 | 27 | 562 | 9 | 1 | 11.1111 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.2460 | 22.8571 | 87.5000 | 74.1935 | 8 | 27 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | hetalt | 66.0377 | 62.5000 | 70.0000 | 76.1905 | 45 | 27 | 14 | 6 | 6 | 100.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 85.0134 | 99.3714 | 74.2808 | 72.6746 | 4268 | 27 | 4312 | 1493 | 22 | 1.4735 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | het | 87.4983 | 97.7667 | 79.1818 | 87.0966 | 1182 | 27 | 1529 | 402 | 157 | 39.0547 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.9811 | 59.5420 | 0 | 27 | 9 | 44 | 12 | 27.2727 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 40.0000 | 0.0000 | 0.0000 | 18 | 27 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | homalt | 95.2448 | 91.7431 | 99.0244 | 77.8618 | 300 | 27 | 406 | 4 | 2 | 50.0000 | |