PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61651-61700 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l125_m1_e0 | * | 96.2822 | 96.8675 | 95.7041 | 87.0978 | 804 | 26 | 802 | 36 | 7 | 19.4444 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 49.0196 | 0.0000 | 0.0000 | 25 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 86.6667 | 0 | 26 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 40.9091 | 0.0000 | 0.0000 | 18 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 40.9091 | 0.0000 | 0.0000 | 18 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l150_m1_e0 | * | 89.6858 | 94.8617 | 85.0455 | 90.4043 | 480 | 26 | 654 | 115 | 40 | 34.7826 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m2_e0 | * | 89.7214 | 94.9904 | 85.0062 | 90.8896 | 493 | 26 | 686 | 121 | 44 | 36.3636 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.0806 | 98.1780 | 100.0000 | 28.9811 | 1401 | 26 | 1387 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | func_cds | homalt | 99.7435 | 99.5071 | 99.9810 | 20.2128 | 5249 | 26 | 5249 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 47.2648 | 48.0000 | 46.5517 | 55.5556 | 24 | 26 | 108 | 124 | 89 | 71.7742 | |
| gduggal-snapvard | INDEL | * | map_l125_m0_e0 | het | 81.4896 | 95.5707 | 71.0250 | 91.1456 | 561 | 26 | 880 | 359 | 93 | 25.9053 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 26 | 0 | 0 | 0 | |||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 67.7648 | 90.3704 | 54.2056 | 47.4847 | 244 | 26 | 232 | 196 | 196 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 79.1206 | 94.1309 | 68.2390 | 28.6996 | 417 | 26 | 434 | 202 | 202 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 25.0000 | 69.2308 | 0 | 26 | 2 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 77.6732 | 71.7391 | 84.6774 | 54.4118 | 66 | 26 | 105 | 19 | 19 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.7163 | 99.4919 | 90.3781 | 51.0003 | 5091 | 26 | 5091 | 542 | 540 | 99.6310 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e0 | * | 97.8099 | 97.7253 | 97.8947 | 86.9699 | 1117 | 26 | 1116 | 24 | 2 | 8.3333 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.4322 | 96.6365 | 96.2287 | 73.8133 | 747 | 26 | 791 | 31 | 21 | 67.7419 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | * | 86.6896 | 77.1930 | 98.8506 | 81.4894 | 88 | 26 | 86 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 91.5507 | 98.2850 | 85.6800 | 74.8152 | 1490 | 26 | 1430 | 239 | 16 | 6.6946 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.1991 | 98.2644 | 96.1566 | 80.7160 | 1472 | 26 | 1326 | 53 | 19 | 35.8491 | |
| gduggal-bwafb | INDEL | * | func_cds | * | 95.8862 | 94.1573 | 97.6798 | 38.6040 | 419 | 26 | 421 | 10 | 8 | 80.0000 | |
| gduggal-bwavard | SNP | * | map_l250_m0_e0 | homalt | 97.3310 | 95.8665 | 98.8411 | 92.8933 | 603 | 26 | 597 | 7 | 5 | 71.4286 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e0 | het | 77.5862 | 63.3803 | 100.0000 | 96.9940 | 45 | 26 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e1 | het | 77.5862 | 63.3803 | 100.0000 | 97.0646 | 45 | 26 | 45 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1176 | 98.5286 | 99.7136 | 61.8611 | 1741 | 26 | 1741 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 72.9167 | 57.3770 | 100.0000 | 85.5967 | 35 | 26 | 35 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | het | 78.7879 | 66.6667 | 96.2963 | 95.7447 | 52 | 26 | 52 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | segdup | homalt | 96.2428 | 92.7577 | 100.0000 | 94.6099 | 333 | 26 | 333 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.3226 | 82.8947 | 99.2126 | 91.1560 | 126 | 26 | 126 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | map_l250_m0_e0 | * | 97.1091 | 96.6013 | 97.6222 | 91.9886 | 739 | 26 | 739 | 18 | 2 | 11.1111 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.7206 | 98.6423 | 98.7990 | 83.5904 | 1889 | 26 | 1892 | 23 | 9 | 39.1304 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.7364 | 98.6591 | 98.8138 | 83.7031 | 1913 | 26 | 1916 | 23 | 9 | 39.1304 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.5327 | 98.0994 | 98.9698 | 83.9986 | 1342 | 26 | 1345 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | HG002complexvar | homalt | 98.6717 | 97.8583 | 99.4987 | 53.9792 | 1188 | 26 | 1191 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.9089 | 82.5503 | 89.5522 | 75.5027 | 123 | 26 | 120 | 14 | 12 | 85.7143 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3658 | 97.2888 | 99.4670 | 68.3001 | 933 | 26 | 933 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | het | 98.3621 | 97.9299 | 98.7981 | 81.8710 | 1230 | 26 | 1233 | 15 | 3 | 20.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | het | 98.3776 | 97.9495 | 98.8095 | 82.0257 | 1242 | 26 | 1245 | 15 | 3 | 20.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | * | 98.1075 | 97.6103 | 98.6098 | 84.5171 | 1062 | 26 | 1064 | 15 | 4 | 26.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | * | 98.1990 | 97.7253 | 98.6772 | 85.2305 | 1117 | 26 | 1119 | 15 | 4 | 26.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | * | 98.2208 | 97.7528 | 98.6934 | 85.3084 | 1131 | 26 | 1133 | 15 | 4 | 26.6667 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.0254 | 98.4733 | 99.5838 | 72.6059 | 1677 | 26 | 1675 | 7 | 2 | 28.5714 | |
| rpoplin-dv42 | SNP | tv | map_l250_m1_e0 | homalt | 98.2249 | 96.9626 | 99.5204 | 86.9197 | 830 | 26 | 830 | 4 | 4 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | * | 94.0978 | 91.4754 | 96.8750 | 81.5974 | 279 | 26 | 279 | 9 | 8 | 88.8889 | |
| egarrison-hhga | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.7531 | 98.4597 | 99.0482 | 61.5420 | 1662 | 26 | 1665 | 16 | 8 | 50.0000 | |