PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61351-61400 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.2269 | 98.6744 | 99.7855 | 71.4089 | 1861 | 25 | 1861 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_siren | homalt | 99.1894 | 99.0584 | 99.3208 | 79.6138 | 2630 | 25 | 2632 | 18 | 11 | 61.1111 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.8956 | 97.3822 | 98.4144 | 74.9934 | 930 | 25 | 931 | 15 | 13 | 86.6667 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.3343 | 83.8710 | 91.0959 | 81.8408 | 130 | 25 | 133 | 13 | 13 | 100.0000 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | hetalt | 56.1404 | 39.0244 | 100.0000 | 68.6275 | 16 | 25 | 16 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| mlin-fermikit | SNP | * | map_l100_m2_e1 | hetalt | 59.0164 | 41.8605 | 100.0000 | 70.9677 | 18 | 25 | 18 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3991 | 99.3730 | 97.4441 | 42.0040 | 3962 | 25 | 3965 | 104 | 97 | 93.2692 | |
| mlin-fermikit | SNP | ti | map_siren | hetalt | 71.9101 | 56.1404 | 100.0000 | 66.6667 | 32 | 25 | 32 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m1_e0 | hetalt | 56.1404 | 39.0244 | 100.0000 | 68.6275 | 16 | 25 | 16 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m2_e0 | hetalt | 57.6271 | 40.4762 | 100.0000 | 71.6667 | 17 | 25 | 17 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | map_l100_m2_e1 | hetalt | 59.0164 | 41.8605 | 100.0000 | 70.9677 | 18 | 25 | 18 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 79.2418 | 93.0939 | 68.9781 | 57.8721 | 337 | 25 | 945 | 425 | 175 | 41.1765 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.9542 | 96.7192 | 97.1903 | 68.5416 | 737 | 25 | 761 | 22 | 7 | 31.8182 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | * | 65.7764 | 70.9302 | 61.3208 | 81.7556 | 61 | 25 | 65 | 41 | 5 | 12.1951 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m1_e0 | homalt | 59.6512 | 43.1818 | 96.4286 | 96.5895 | 19 | 25 | 27 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | homalt | 60.9137 | 44.4444 | 96.7742 | 96.6559 | 20 | 25 | 30 | 1 | 0 | 0.0000 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | homalt | 62.0591 | 45.6522 | 96.8750 | 96.6562 | 21 | 25 | 31 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.8674 | 97.4798 | 94.3074 | 69.5552 | 967 | 25 | 994 | 60 | 2 | 3.3333 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 89.5397 | 81.0606 | 100.0000 | 76.2115 | 107 | 25 | 108 | 0 | 0 | ||
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.1960 | 96.5132 | 81.1986 | 71.1330 | 692 | 25 | 691 | 160 | 160 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 77.8761 | 63.7681 | 100.0000 | 58.0952 | 44 | 25 | 44 | 0 | 0 | ||
| mlin-fermikit | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 63.7681 | 46.8085 | 100.0000 | 89.1089 | 22 | 25 | 22 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.3087 | 97.3822 | 99.2529 | 77.8277 | 930 | 25 | 930 | 7 | 5 | 71.4286 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e1 | * | 98.6318 | 98.2079 | 99.0593 | 84.2255 | 1370 | 25 | 1369 | 13 | 3 | 23.0769 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.6589 | 89.8785 | 91.4530 | 77.6930 | 222 | 25 | 214 | 20 | 12 | 60.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.9977 | 96.8112 | 99.2136 | 36.6279 | 759 | 25 | 757 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6016 | 96.7192 | 96.4844 | 63.4807 | 737 | 25 | 741 | 27 | 4 | 14.8148 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6187 | 99.3868 | 99.8516 | 38.0325 | 4052 | 25 | 4038 | 6 | 2 | 33.3333 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 81.4336 | 70.9302 | 95.5882 | 72.4696 | 61 | 25 | 65 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0901 | 99.5957 | 98.5896 | 55.8133 | 6159 | 25 | 6291 | 90 | 2 | 2.2222 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7995 | 99.6294 | 99.9702 | 32.6604 | 6720 | 25 | 6703 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6500 | 99.6294 | 99.6706 | 40.2309 | 6720 | 25 | 6656 | 22 | 11 | 50.0000 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.4125 | 98.9911 | 99.8375 | 43.7900 | 2453 | 25 | 2458 | 4 | 1 | 25.0000 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 96.9066 | 98.3509 | 95.5042 | 77.2302 | 1491 | 25 | 1487 | 70 | 13 | 18.5714 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.6077 | 95.3271 | 100.0000 | 72.7898 | 510 | 25 | 514 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m0_e0 | * | 97.2788 | 97.1655 | 97.3923 | 98.8463 | 857 | 25 | 859 | 23 | 6 | 26.0870 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.3504 | 84.7561 | 81.9905 | 78.4033 | 139 | 25 | 173 | 38 | 34 | 89.4737 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 77.0538 | 84.4720 | 70.8333 | 31.6726 | 136 | 25 | 136 | 56 | 35 | 62.5000 | |
| ndellapenna-hhga | INDEL | D6_15 | segdup | * | 90.7237 | 86.9110 | 94.8864 | 93.3635 | 166 | 25 | 167 | 9 | 7 | 77.7778 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0444 | 96.2236 | 97.8793 | 78.6262 | 637 | 25 | 600 | 13 | 8 | 61.5385 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.0587 | 99.3353 | 98.7837 | 71.2941 | 3736 | 25 | 3736 | 46 | 45 | 97.8261 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0587 | 99.3353 | 98.7837 | 71.2941 | 3736 | 25 | 3736 | 46 | 45 | 97.8261 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 96.8450 | 95.2919 | 98.4496 | 90.8802 | 506 | 25 | 508 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.1193 | 92.1136 | 98.3278 | 91.8149 | 292 | 25 | 294 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.2298 | 72.8261 | 97.1014 | 59.1716 | 67 | 25 | 67 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.8074 | 98.3509 | 99.2681 | 69.2197 | 1491 | 25 | 1492 | 11 | 2 | 18.1818 | |
| anovak-vg | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 59.4656 | 87.5000 | 45.0363 | 57.4665 | 175 | 25 | 186 | 227 | 205 | 90.3084 | |
| anovak-vg | SNP | * | tech_badpromoters | * | 89.4635 | 84.0764 | 95.5882 | 39.8230 | 132 | 25 | 130 | 6 | 6 | 100.0000 | |
| astatham-gatk | INDEL | * | HG002complexvar | homalt | 99.7747 | 99.9075 | 99.6422 | 57.3610 | 27002 | 25 | 27012 | 97 | 94 | 96.9072 | |