PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
61101-61150 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | homalt | 99.8415 | 99.7971 | 99.8860 | 75.5645 | 11803 | 24 | 11393 | 13 | 8 | 61.5385 | |
| eyeh-varpipe | SNP | ti | map_l250_m1_e0 | het | 98.4913 | 99.1914 | 97.8011 | 90.9985 | 2944 | 24 | 2891 | 65 | 4 | 6.1539 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e0 | het | 98.6087 | 99.2624 | 97.9636 | 91.2085 | 3230 | 24 | 3175 | 66 | 4 | 6.0606 | |
| eyeh-varpipe | SNP | ti | map_l250_m2_e1 | het | 98.5825 | 99.2725 | 97.9021 | 91.2682 | 3275 | 24 | 3220 | 69 | 4 | 5.7971 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | het | 94.2875 | 99.6677 | 89.4585 | 75.0937 | 7198 | 24 | 7137 | 841 | 11 | 1.3080 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.9998 | 98.8848 | 99.1150 | 44.5935 | 2128 | 24 | 2128 | 19 | 14 | 73.6842 | |
| egarrison-hhga | INDEL | * | map_l150_m1_e0 | het | 97.3128 | 97.1930 | 97.4329 | 89.1766 | 831 | 24 | 835 | 22 | 6 | 27.2727 | |
| egarrison-hhga | INDEL | * | map_l150_m2_e0 | het | 97.4639 | 97.3510 | 97.5771 | 89.7297 | 882 | 24 | 886 | 22 | 6 | 27.2727 | |
| egarrison-hhga | INDEL | * | map_l150_m2_e1 | het | 97.5133 | 97.4026 | 97.6242 | 89.7600 | 900 | 24 | 904 | 22 | 6 | 27.2727 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.7816 | 96.6527 | 91.0761 | 57.6667 | 693 | 24 | 694 | 68 | 49 | 72.0588 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.5301 | 85.0932 | 80.1170 | 31.8725 | 137 | 24 | 137 | 34 | 15 | 44.1176 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 72.0994 | 59.3220 | 91.8919 | 66.3636 | 35 | 24 | 34 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 84.6884 | 81.9549 | 87.6106 | 84.2399 | 109 | 24 | 99 | 14 | 7 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.2319 | 85.0000 | 87.5000 | 86.9801 | 136 | 24 | 126 | 18 | 8 | 44.4444 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 88.5478 | 83.8926 | 93.7500 | 74.1935 | 125 | 24 | 120 | 8 | 6 | 75.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.8228 | 92.2830 | 89.4081 | 69.5735 | 287 | 24 | 287 | 34 | 29 | 85.2941 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 91.3669 | 84.1060 | 100.0000 | 44.5887 | 127 | 24 | 128 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.2037 | 89.1403 | 93.3649 | 89.3380 | 197 | 24 | 197 | 14 | 9 | 64.2857 | |
| egarrison-hhga | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.9773 | 97.5806 | 98.3773 | 68.8271 | 968 | 24 | 970 | 16 | 5 | 31.2500 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | * | 22.8571 | 14.2857 | 57.1429 | 94.9640 | 4 | 24 | 4 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m1_e0 | * | 19.3548 | 11.1111 | 75.0000 | 97.5309 | 3 | 24 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e0 | * | 19.3548 | 11.1111 | 75.0000 | 97.8378 | 3 | 24 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 77.8761 | 64.7059 | 97.7778 | 67.3913 | 44 | 24 | 44 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 77.8761 | 64.7059 | 97.7778 | 70.0000 | 44 | 24 | 44 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | * | 39.0244 | 25.0000 | 88.8889 | 96.4567 | 8 | 24 | 8 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e0 | het | 94.7832 | 95.3307 | 94.2418 | 93.7274 | 490 | 24 | 491 | 30 | 3 | 10.0000 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8789 | 99.1218 | 96.6667 | 63.6387 | 2709 | 24 | 2697 | 93 | 90 | 96.7742 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.2891 | 91.6084 | 99.2780 | 52.0761 | 262 | 24 | 275 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e1 | * | 96.5736 | 95.4802 | 97.6923 | 93.3153 | 507 | 24 | 508 | 12 | 2 | 16.6667 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9845 | 98.4426 | 99.5324 | 77.7099 | 1517 | 24 | 1490 | 7 | 2 | 28.5714 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.9506 | 73.9130 | 97.1429 | 57.8313 | 68 | 24 | 68 | 2 | 1 | 50.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1767 | 98.6892 | 99.6691 | 48.1704 | 1807 | 24 | 1807 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.3170 | 80.6452 | 95.1923 | 99.9131 | 100 | 24 | 99 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.7839 | 72.4138 | 93.9394 | 99.8971 | 63 | 24 | 62 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | map_l150_m2_e0 | * | 98.2631 | 98.2955 | 98.2307 | 88.7365 | 1384 | 24 | 1388 | 25 | 6 | 24.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_siren | * | 99.3769 | 99.3199 | 99.4339 | 78.1455 | 3505 | 24 | 3513 | 20 | 5 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1143 | 98.5907 | 99.6435 | 73.6743 | 1679 | 24 | 1677 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9597 | 91.0781 | 99.1870 | 75.5952 | 245 | 24 | 244 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8787 | 99.7922 | 99.9653 | 69.1476 | 11528 | 24 | 11528 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8787 | 99.7922 | 99.9653 | 69.1476 | 11528 | 24 | 11528 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 94.5666 | 98.2288 | 91.1677 | 82.1653 | 1331 | 24 | 1218 | 118 | 65 | 55.0847 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.3732 | 96.7655 | 97.9885 | 73.3129 | 718 | 24 | 682 | 14 | 9 | 64.2857 | |
| jlack-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.4853 | 99.5058 | 99.4648 | 66.6987 | 4832 | 24 | 4832 | 26 | 14 | 53.8462 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.4456 | 96.9388 | 100.0000 | 33.7549 | 760 | 24 | 838 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 96.2535 | 93.7662 | 98.8764 | 76.3769 | 361 | 24 | 352 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6680 | 99.4113 | 99.9261 | 41.1569 | 4053 | 24 | 4056 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_siren | het | 98.9267 | 98.5723 | 99.2836 | 81.6659 | 1657 | 24 | 1663 | 12 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.8825 | 96.6527 | 99.1441 | 85.9378 | 693 | 24 | 695 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.0117 | 96.8545 | 99.1968 | 86.8347 | 739 | 24 | 741 | 6 | 1 | 16.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m2_e0 | * | 98.7520 | 98.2456 | 99.2636 | 83.3619 | 1344 | 24 | 1348 | 10 | 4 | 40.0000 | |