PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
59501-59550 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 87.8505 | 83.1858 | 93.0693 | 97.3379 | 94 | 19 | 94 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 87.9630 | 83.3333 | 93.1373 | 97.3953 | 95 | 19 | 95 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | * | 98.7667 | 98.2059 | 99.3340 | 95.0336 | 1040 | 19 | 1044 | 7 | 2 | 28.5714 | |
| asubramanian-gatk | SNP | ti | HG002complexvar | hetalt | 94.4724 | 90.8213 | 98.4293 | 40.4984 | 188 | 19 | 188 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.1770 | 98.4477 | 99.9171 | 58.7551 | 1205 | 19 | 1205 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5884 | 99.5263 | 99.6506 | 48.9164 | 3992 | 19 | 3993 | 14 | 1 | 7.1429 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.1239 | 97.7673 | 98.4831 | 88.4750 | 832 | 19 | 844 | 13 | 7 | 53.8462 | |
| asubramanian-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 51.2821 | 34.4828 | 100.0000 | 89.3617 | 10 | 19 | 10 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 53.6585 | 36.6667 | 100.0000 | 89.6226 | 11 | 19 | 11 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 55.8140 | 38.7097 | 100.0000 | 88.7850 | 12 | 19 | 12 | 0 | 0 | ||
| anovak-vg | INDEL | * | func_cds | homalt | 87.7119 | 91.5929 | 84.1463 | 33.8710 | 207 | 19 | 207 | 39 | 35 | 89.7436 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | homalt | 59.9144 | 44.1176 | 93.3333 | 91.0180 | 15 | 19 | 14 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | * | 79.8957 | 77.6471 | 82.2785 | 91.1236 | 66 | 19 | 65 | 14 | 9 | 64.2857 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 71.0216 | 96.2525 | 56.2712 | 87.6827 | 488 | 19 | 498 | 387 | 79 | 20.4134 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 89.8551 | 98.9247 | 82.3088 | 71.2571 | 1748 | 19 | 1754 | 377 | 114 | 30.2387 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.9677 | 98.5714 | 95.4152 | 84.7413 | 1311 | 19 | 1103 | 53 | 36 | 67.9245 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8835 | 99.8894 | 99.8776 | 53.9498 | 17158 | 19 | 17135 | 21 | 9 | 42.8571 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 54.6535 | 62.0000 | 48.8636 | 68.3453 | 31 | 19 | 43 | 45 | 30 | 66.6667 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 42.0233 | 85.0394 | 27.9070 | 48.4000 | 108 | 19 | 108 | 279 | 270 | 96.7742 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 74.3482 | 63.4615 | 89.7436 | 70.8955 | 33 | 19 | 35 | 4 | 4 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 19 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 5.0000 | 0.0000 | 0.0000 | 1 | 19 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l150_m1_e0 | het | 51.9481 | 51.2821 | 52.6316 | 95.3827 | 20 | 19 | 20 | 18 | 3 | 16.6667 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 21.4286 | 24.0000 | 19.3548 | 89.1228 | 6 | 19 | 6 | 25 | 21 | 84.0000 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 25.6410 | 20.8333 | 33.3333 | 90.9091 | 5 | 19 | 5 | 10 | 9 | 90.0000 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.1734 | 98.5778 | 99.7763 | 50.5713 | 1317 | 19 | 1338 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | * | map_siren | homalt | 99.3412 | 99.2844 | 99.3980 | 81.7081 | 2636 | 19 | 2642 | 16 | 9 | 56.2500 | |
| ckim-gatk | INDEL | D16_PLUS | * | het | 97.6163 | 99.3985 | 95.8968 | 79.2687 | 3140 | 19 | 2898 | 124 | 70 | 56.4516 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.4086 | 85.9259 | 81.0345 | 77.7778 | 116 | 19 | 94 | 22 | 21 | 95.4545 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.2384 | 96.8903 | 88.0126 | 71.8972 | 592 | 19 | 558 | 76 | 72 | 94.7368 | |
| ckim-gatk | SNP | * | * | hetalt | 98.6111 | 97.8186 | 99.4166 | 53.8999 | 852 | 19 | 852 | 5 | 4 | 80.0000 | |
| ckim-gatk | SNP | * | HG002compoundhet | hetalt | 98.8856 | 97.7958 | 100.0000 | 22.8728 | 843 | 19 | 843 | 0 | 0 | ||
| ckim-gatk | SNP | tv | * | hetalt | 98.6111 | 97.8186 | 99.4166 | 53.8999 | 852 | 19 | 852 | 5 | 4 | 80.0000 | |
| ckim-gatk | SNP | tv | HG002compoundhet | hetalt | 98.8856 | 97.7958 | 100.0000 | 22.8728 | 843 | 19 | 843 | 0 | 0 | ||
| ckim-isaac | INDEL | * | func_cds | * | 97.5940 | 95.7303 | 99.5316 | 35.2049 | 426 | 19 | 425 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.5874 | 94.5714 | 98.6911 | 35.4730 | 331 | 19 | 377 | 5 | 5 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | HG002complexvar | homalt | 99.7544 | 99.8207 | 99.6881 | 60.4958 | 10579 | 19 | 10549 | 33 | 30 | 90.9091 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.5338 | 99.7378 | 97.3585 | 36.6570 | 7228 | 19 | 7224 | 196 | 195 | 99.4898 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.7691 | 99.7171 | 99.8211 | 53.8271 | 6697 | 19 | 6696 | 12 | 7 | 58.3333 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | het | 96.3840 | 97.3829 | 95.4054 | 88.2297 | 707 | 19 | 706 | 34 | 3 | 8.8235 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e0 | het | 96.3746 | 97.5131 | 95.2625 | 88.9141 | 745 | 19 | 744 | 37 | 3 | 8.1081 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m2_e1 | het | 96.4026 | 97.5325 | 95.2986 | 89.0022 | 751 | 19 | 750 | 37 | 3 | 8.1081 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m1_e0 | * | 96.9396 | 97.3501 | 96.5326 | 89.6646 | 698 | 19 | 696 | 25 | 3 | 12.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e0 | * | 96.9967 | 97.5098 | 96.4889 | 90.2658 | 744 | 19 | 742 | 27 | 3 | 11.1111 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.9371 | 98.3926 | 99.4876 | 27.8052 | 1163 | 19 | 1165 | 6 | 6 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3235 | 99.1976 | 99.4496 | 87.1665 | 2349 | 19 | 2349 | 13 | 13 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6905 | 99.8338 | 99.5476 | 42.3216 | 11414 | 19 | 11441 | 52 | 4 | 7.6923 | |
| ckim-dragen | SNP | ti | map_l250_m1_e0 | homalt | 99.1261 | 98.8177 | 99.4364 | 82.0944 | 1588 | 19 | 1588 | 9 | 8 | 88.8889 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.7110 | 91.4414 | 96.0961 | 45.1400 | 203 | 19 | 320 | 13 | 11 | 84.6154 | |