PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58851-58900 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9438 | 90.8602 | 99.4118 | 70.1230 | 169 | 17 | 169 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7569 | 99.5658 | 99.9487 | 80.8702 | 3898 | 17 | 3898 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | het | 97.0280 | 97.0280 | 97.0280 | 91.3647 | 555 | 17 | 555 | 17 | 12 | 70.5882 | |
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | homalt | 99.7265 | 99.5580 | 99.8956 | 59.9142 | 3829 | 17 | 3829 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | homalt | 99.7335 | 99.5692 | 99.8983 | 67.6642 | 3929 | 17 | 3929 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | homalt | 99.7424 | 99.5836 | 99.9017 | 70.2246 | 4066 | 17 | 4066 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | segdup | het | 98.8084 | 98.8404 | 98.7763 | 94.3566 | 1449 | 17 | 1453 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.4054 | 95.8637 | 98.9975 | 72.4828 | 394 | 17 | 395 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7631 | 98.9728 | 98.5542 | 60.1632 | 1638 | 17 | 1636 | 24 | 21 | 87.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.4869 | 97.9518 | 99.0279 | 85.4026 | 813 | 17 | 815 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.5532 | 99.4766 | 99.6299 | 68.0748 | 3231 | 17 | 3230 | 12 | 5 | 41.6667 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l100_m0_e0 | * | 98.0857 | 97.9143 | 98.2578 | 84.7960 | 845 | 18 | 846 | 15 | 6 | 40.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.3020 | 98.3456 | 98.2585 | 85.8752 | 1070 | 18 | 1072 | 19 | 8 | 42.1053 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.3836 | 98.4252 | 98.3421 | 86.5303 | 1125 | 18 | 1127 | 19 | 8 | 42.1053 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l125_m2_e1 | * | 98.4031 | 98.4443 | 98.3621 | 86.6144 | 1139 | 18 | 1141 | 19 | 8 | 42.1053 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 87.0071 | 83.0189 | 91.3978 | 81.9767 | 88 | 18 | 85 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 94.5783 | 89.7143 | 100.0000 | 60.7407 | 157 | 18 | 159 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.4511 | 98.9430 | 97.9639 | 73.8833 | 1685 | 18 | 1684 | 35 | 28 | 80.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.8202 | 98.3099 | 99.3359 | 67.6190 | 1047 | 18 | 1047 | 7 | 5 | 71.4286 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.4753 | 97.8996 | 99.0577 | 86.5940 | 839 | 18 | 841 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.4982 | 97.9310 | 99.0719 | 86.7466 | 852 | 18 | 854 | 8 | 3 | 37.5000 | |
| rpoplin-dv42 | SNP | * | HG002compoundhet | homalt | 99.7682 | 99.8331 | 99.7035 | 35.1268 | 10764 | 18 | 10759 | 32 | 29 | 90.6250 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8687 | 99.8426 | 99.8949 | 39.6597 | 11415 | 18 | 11408 | 12 | 3 | 25.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.3133 | 95.5112 | 99.1848 | 77.7374 | 383 | 18 | 365 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | het | 97.8601 | 97.5207 | 98.2019 | 84.3405 | 708 | 18 | 710 | 13 | 2 | 15.3846 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | het | 97.9668 | 97.6440 | 98.2917 | 85.0197 | 746 | 18 | 748 | 13 | 2 | 15.3846 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | het | 97.9827 | 97.6623 | 98.3051 | 85.1328 | 752 | 18 | 754 | 13 | 2 | 15.3846 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.5545 | 91.3876 | 97.9487 | 73.9305 | 191 | 18 | 191 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3616 | 98.9595 | 99.7670 | 33.2686 | 1712 | 18 | 1713 | 4 | 3 | 75.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.6731 | 91.7051 | 100.0000 | 37.4251 | 199 | 18 | 209 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m1_e0 | * | 97.0226 | 96.4427 | 97.6096 | 87.2589 | 488 | 18 | 490 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e0 | * | 97.0975 | 96.5318 | 97.6699 | 88.6863 | 501 | 18 | 503 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m2_e1 | * | 97.1634 | 96.6102 | 97.7230 | 88.7825 | 513 | 18 | 515 | 12 | 1 | 8.3333 | |
| raldana-dualsentieon | INDEL | I6_15 | * | homalt | 97.3324 | 99.7115 | 95.0642 | 52.3622 | 6221 | 18 | 6221 | 323 | 318 | 98.4520 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6479 | 90.3226 | 99.4083 | 67.9924 | 168 | 18 | 168 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 90.2174 | 82.1782 | 100.0000 | 93.4543 | 83 | 18 | 83 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7785 | 99.6681 | 99.8891 | 70.9180 | 5405 | 18 | 5405 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2844 | 98.6527 | 99.9242 | 46.2291 | 1318 | 18 | 1318 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.8777 | 97.8947 | 99.8807 | 46.8948 | 837 | 18 | 837 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7785 | 99.6681 | 99.8891 | 70.9180 | 5405 | 18 | 5405 | 6 | 5 | 83.3333 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e1 | homalt | 99.7335 | 99.5646 | 99.9029 | 70.1838 | 4116 | 18 | 4116 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | segdup | het | 99.3773 | 99.6595 | 99.0966 | 91.7904 | 5269 | 18 | 5265 | 48 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | het | 62.9857 | 53.8462 | 75.8621 | 84.2391 | 21 | 18 | 22 | 7 | 4 | 57.1429 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 79.4582 | 83.0189 | 76.1905 | 81.2500 | 88 | 18 | 80 | 25 | 25 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 79.0698 | 65.3846 | 100.0000 | 61.5385 | 34 | 18 | 35 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m0_e0 | * | 57.9710 | 45.4545 | 80.0000 | 87.8049 | 15 | 18 | 16 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | ti | map_l100_m1_e0 | hetalt | 55.0000 | 37.9310 | 100.0000 | 70.2703 | 11 | 18 | 11 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | hetalt | 57.1429 | 40.0000 | 100.0000 | 72.0930 | 12 | 18 | 12 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l100_m2_e1 | hetalt | 59.0909 | 41.9355 | 100.0000 | 71.1111 | 13 | 18 | 13 | 0 | 0 | ||
| mlin-fermikit | SNP | ti | map_l125_m1_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 68.4211 | 6 | 18 | 6 | 0 | 0 | ||