PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58651-58700 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 55.0999 | 88.5135 | 40.0000 | 49.5006 | 131 | 17 | 182 | 273 | 271 | 99.2674 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 67.6759 | 54.0541 | 90.4762 | 58.8235 | 20 | 17 | 19 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | map_siren | * | 83.2113 | 80.2326 | 86.4198 | 84.0551 | 69 | 17 | 70 | 11 | 7 | 63.6364 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.4743 | 92.1659 | 99.0291 | 42.7778 | 200 | 17 | 204 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | * | 98.8042 | 98.7304 | 98.8781 | 83.3892 | 1322 | 17 | 1322 | 15 | 3 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e0 | * | 98.7934 | 98.7573 | 98.8296 | 84.6491 | 1351 | 17 | 1351 | 16 | 3 | 18.7500 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7945 | 99.7208 | 99.8684 | 54.9696 | 6071 | 17 | 6072 | 8 | 7 | 87.5000 | |
| egarrison-hhga | SNP | tv | map_l100_m0_e0 | homalt | 99.7265 | 99.5580 | 99.8956 | 63.0055 | 3829 | 17 | 3829 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | * | map_l125_m2_e0 | hetalt | 73.6278 | 59.5238 | 96.4912 | 93.6947 | 25 | 17 | 55 | 2 | 1 | 50.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.8343 | 98.2863 | 99.3884 | 71.8022 | 975 | 17 | 975 | 6 | 2 | 33.3333 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7994 | 99.7475 | 99.8514 | 49.4629 | 6716 | 17 | 6718 | 10 | 6 | 60.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.8861 | 95.1429 | 98.6945 | 35.5219 | 333 | 17 | 378 | 5 | 5 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 85.9341 | 80.4598 | 92.2078 | 71.1610 | 70 | 17 | 71 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 75.3247 | 63.0435 | 93.5484 | 55.0725 | 29 | 17 | 29 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | het | 16.6667 | 10.5263 | 40.0000 | 95.2381 | 2 | 17 | 2 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1930 | 66.6667 | 91.6667 | 89.2216 | 34 | 17 | 33 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 78.7936 | 69.0909 | 91.6667 | 70.8738 | 38 | 17 | 55 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 70.5404 | 70.1754 | 70.9091 | 97.0238 | 40 | 17 | 39 | 16 | 5 | 31.2500 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m0_e0 | het | 25.0000 | 15.0000 | 75.0000 | 97.9695 | 3 | 17 | 3 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l150_m2_e1 | homalt | 58.5366 | 41.3793 | 100.0000 | 80.0000 | 12 | 17 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 51.4286 | 34.6154 | 100.0000 | 86.1538 | 9 | 17 | 9 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.1516 | 93.6330 | 98.8095 | 54.5946 | 250 | 17 | 249 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | D6_15 | HG002compoundhet | het | 89.9917 | 98.0140 | 83.1832 | 68.8202 | 839 | 17 | 831 | 168 | 166 | 98.8095 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.3320 | 93.0894 | 97.6852 | 88.7676 | 229 | 17 | 211 | 5 | 3 | 60.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3193 | 96.8692 | 97.7737 | 89.6605 | 526 | 17 | 527 | 12 | 2 | 16.6667 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | het | 95.9671 | 94.7853 | 97.1787 | 91.9444 | 309 | 17 | 310 | 9 | 0 | 0.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3658 | 98.8087 | 99.9291 | 26.8533 | 1410 | 17 | 1410 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8076 | 99.7578 | 99.8575 | 57.0019 | 7002 | 17 | 7006 | 10 | 6 | 60.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m2_e1 | hetalt | 74.2857 | 60.4651 | 96.2963 | 89.4531 | 26 | 17 | 26 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e1 | het | 62.2222 | 66.6667 | 58.3333 | 92.7449 | 34 | 17 | 35 | 25 | 10 | 40.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.0752 | 90.4494 | 95.8580 | 71.6918 | 161 | 17 | 162 | 7 | 6 | 85.7143 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 91.7051 | 92.1296 | 91.2844 | 63.1134 | 199 | 17 | 199 | 19 | 15 | 78.9474 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 95.1002 | 96.1712 | 94.0529 | 81.2552 | 427 | 17 | 427 | 27 | 22 | 81.4815 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8164 | 99.7288 | 99.9041 | 43.6419 | 6251 | 17 | 6252 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.6780 | 86.2903 | 95.5357 | 87.6243 | 107 | 17 | 107 | 5 | 3 | 60.0000 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 96.7880 | 96.3753 | 97.2043 | 81.1588 | 452 | 17 | 452 | 13 | 13 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.8253 | 70.1754 | 98.1132 | 94.2888 | 40 | 17 | 52 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 82.8773 | 71.6667 | 98.2456 | 94.4714 | 43 | 17 | 56 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m2_e1 | homalt | 82.8881 | 71.6667 | 98.2759 | 94.5283 | 43 | 17 | 57 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.7499 | 98.0301 | 97.4713 | 60.6157 | 846 | 17 | 848 | 22 | 7 | 31.8182 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 88.6433 | 91.1458 | 86.2745 | 46.1741 | 175 | 17 | 176 | 28 | 19 | 67.8571 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.5179 | 97.5818 | 93.5395 | 36.9311 | 686 | 17 | 1361 | 94 | 10 | 10.6383 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 97.0890 | 0.0000 | 0.0000 | 567 | 17 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_siren | hetalt | 0.0000 | 82.8283 | 0.0000 | 0.0000 | 82 | 17 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.2222 | 98.4038 | 98.0413 | 45.0797 | 1048 | 17 | 2703 | 54 | 37 | 68.5185 | |
| qzeng-custom | INDEL | I6_15 | HG002complexvar | homalt | 93.7520 | 98.5997 | 89.3586 | 51.1570 | 1197 | 17 | 1226 | 146 | 83 | 56.8493 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 93.2190 | 92.9752 | 93.4641 | 64.4599 | 225 | 17 | 286 | 20 | 5 | 25.0000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1026 | 99.7251 | 98.4878 | 62.3729 | 6167 | 17 | 6122 | 94 | 6 | 6.3830 | |
| qzeng-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7774 | 99.7208 | 99.8342 | 53.5684 | 6071 | 17 | 6021 | 10 | 8 | 80.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5541 | 99.2049 | 99.9057 | 74.5256 | 2121 | 17 | 2119 | 2 | 1 | 50.0000 | |