PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
58201-58250 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4853 | 98.2646 | 98.7069 | 72.8496 | 906 | 16 | 916 | 12 | 1 | 8.3333 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | * | 99.1335 | 98.5494 | 99.7245 | 92.9129 | 1087 | 16 | 1086 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | HG002compoundhet | het | 74.1304 | 65.9574 | 84.6154 | 79.8969 | 31 | 16 | 33 | 6 | 5 | 83.3333 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.8367 | 84.9057 | 100.0000 | 73.6544 | 90 | 16 | 93 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I6_15 | HG002complexvar | homalt | 98.9952 | 98.6820 | 99.3103 | 43.9072 | 1198 | 16 | 1152 | 8 | 5 | 62.5000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2788 | 89.2617 | 97.6744 | 69.3587 | 133 | 16 | 126 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.5238 | 99.0521 | 100.0000 | 59.3712 | 1672 | 16 | 1680 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.1130 | 99.2516 | 98.9748 | 72.3987 | 2122 | 16 | 2124 | 22 | 4 | 18.1818 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 89.8734 | 81.6092 | 100.0000 | 99.8937 | 71 | 16 | 73 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.3367 | 78.3784 | 93.6508 | 78.1250 | 58 | 16 | 59 | 4 | 3 | 75.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e0 | * | 83.0189 | 80.4878 | 85.7143 | 91.6847 | 66 | 16 | 66 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 39.6992 | 40.7407 | 38.7097 | 83.7696 | 11 | 16 | 12 | 19 | 18 | 94.7368 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I16_PLUS | map_siren | homalt | 37.0370 | 23.8095 | 83.3333 | 89.6552 | 5 | 16 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | het | 93.6170 | 91.6667 | 95.6522 | 91.4019 | 176 | 16 | 176 | 8 | 5 | 62.5000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 65.2672 | 54.2857 | 81.8182 | 88.5417 | 19 | 16 | 18 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.8551 | 92.7602 | 67.0769 | 92.6287 | 205 | 16 | 218 | 107 | 21 | 19.6262 | |
| jpowers-varprowl | SNP | tv | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | * | map_l100_m1_e0 | homalt | 99.0600 | 98.6960 | 99.4267 | 80.9576 | 1211 | 16 | 1214 | 7 | 4 | 57.1429 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 98.9021 | 98.3051 | 99.5064 | 29.1608 | 928 | 16 | 1008 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7544 | 99.6076 | 99.9016 | 41.9475 | 4061 | 16 | 4062 | 4 | 1 | 25.0000 | |
| jli-custom | INDEL | D1_5 | map_l125_m1_e0 | * | 98.5753 | 98.5294 | 98.6213 | 85.3547 | 1072 | 16 | 1073 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e0 | * | 98.6439 | 98.6002 | 98.6877 | 86.0337 | 1127 | 16 | 1128 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | * | 98.6603 | 98.6171 | 98.7035 | 86.0971 | 1141 | 16 | 1142 | 15 | 5 | 33.3333 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4777 | 99.0751 | 99.8835 | 34.2649 | 1714 | 16 | 1715 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_siren | * | 97.7205 | 96.8566 | 98.6000 | 82.0660 | 493 | 16 | 493 | 7 | 1 | 14.2857 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.3082 | 81.6092 | 98.6111 | 83.0588 | 71 | 16 | 71 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7901 | 94.4056 | 99.2982 | 51.6949 | 270 | 16 | 283 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2478 | 94.4444 | 94.0520 | 77.1259 | 272 | 16 | 253 | 16 | 12 | 75.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1373 | 96.5517 | 99.7758 | 69.8852 | 448 | 16 | 445 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9740 | 99.8086 | 98.1532 | 63.5791 | 8344 | 16 | 8344 | 157 | 156 | 99.3631 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9740 | 99.8086 | 98.1532 | 63.5791 | 8344 | 16 | 8344 | 157 | 156 | 99.3631 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 96.1316 | 98.7261 | 93.6699 | 89.5668 | 1240 | 16 | 1243 | 84 | 6 | 7.1429 | |
| jmaeng-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 96.1672 | 98.7382 | 93.7267 | 89.6330 | 1252 | 16 | 1255 | 84 | 6 | 7.1429 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.6093 | 96.3303 | 96.8900 | 85.7581 | 420 | 16 | 405 | 13 | 5 | 38.4615 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.8750 | 95.8763 | 97.8947 | 75.5627 | 372 | 16 | 372 | 8 | 4 | 50.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.1862 | 98.8261 | 99.5489 | 78.4824 | 1347 | 16 | 1324 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.4606 | 91.0112 | 98.1818 | 72.8171 | 162 | 16 | 162 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | * | func_cds | homalt | 99.8852 | 99.7707 | 100.0000 | 21.6496 | 6963 | 16 | 6963 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.2405 | 95.8549 | 98.6667 | 91.0990 | 370 | 16 | 370 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8574 | 99.7720 | 99.9429 | 62.6048 | 7003 | 16 | 6999 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 84.1931 | 94.0741 | 76.1905 | 60.9756 | 254 | 16 | 256 | 80 | 78 | 97.5000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m1_e0 | * | 92.5373 | 90.6433 | 94.5122 | 95.5544 | 155 | 16 | 155 | 9 | 4 | 44.4444 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | * | 93.0748 | 91.3043 | 94.9153 | 95.7686 | 168 | 16 | 168 | 9 | 4 | 44.4444 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | * | 93.1129 | 91.3514 | 94.9438 | 95.8431 | 169 | 16 | 169 | 9 | 4 | 44.4444 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.7850 | 99.0930 | 98.4789 | 88.6741 | 1748 | 16 | 1748 | 27 | 12 | 44.4444 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8246 | 99.7050 | 99.9445 | 72.0298 | 5407 | 16 | 5407 | 3 | 2 | 66.6667 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0767 | 99.3951 | 98.7603 | 83.0758 | 2629 | 16 | 2629 | 33 | 6 | 18.1818 | |