PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57851-57900 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.9497 | 87.9032 | 94.2149 | 86.1556 | 109 | 15 | 114 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l100_m0_e0 | homalt | 99.7656 | 99.6100 | 99.9217 | 59.8070 | 3831 | 15 | 3829 | 3 | 1 | 33.3333 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m1_e0 | homalt | 99.7842 | 99.6199 | 99.9492 | 67.6001 | 3931 | 15 | 3932 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e0 | homalt | 99.7915 | 99.6326 | 99.9509 | 70.3193 | 4068 | 15 | 4069 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m2_e1 | homalt | 99.7941 | 99.6372 | 99.9515 | 70.3259 | 4119 | 15 | 4123 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m1_e0 | hetalt | 75.7576 | 62.5000 | 96.1538 | 87.0647 | 25 | 15 | 25 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | het | 65.3674 | 67.3913 | 63.4615 | 92.2619 | 31 | 15 | 33 | 19 | 8 | 42.1053 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 57.7428 | 42.3077 | 90.9091 | 78.4314 | 11 | 15 | 10 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 57.8947 | 42.3077 | 91.6667 | 78.1818 | 11 | 15 | 11 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | hetalt | 66.6667 | 51.6129 | 94.1176 | 83.1683 | 16 | 15 | 16 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.8552 | 97.7169 | 97.9938 | 73.0000 | 642 | 15 | 635 | 13 | 12 | 92.3077 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 90.7398 | 88.1890 | 93.4426 | 69.3467 | 112 | 15 | 114 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 76.1905 | 61.5385 | 100.0000 | 64.7059 | 24 | 15 | 24 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 84.2105 | 72.7273 | 100.0000 | 61.9048 | 40 | 15 | 40 | 0 | 0 | ||
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.8272 | 96.9199 | 96.7347 | 59.5376 | 472 | 15 | 474 | 16 | 14 | 87.5000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 95.2238 | 96.6140 | 93.8731 | 40.3394 | 428 | 15 | 429 | 28 | 27 | 96.4286 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | * | 43.0769 | 31.8182 | 66.6667 | 94.2308 | 7 | 15 | 8 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | * | 43.0769 | 31.8182 | 66.6667 | 94.3396 | 7 | 15 | 8 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 89.8965 | 92.6829 | 87.2727 | 88.8945 | 190 | 15 | 192 | 28 | 27 | 96.4286 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 89.8965 | 92.6829 | 87.2727 | 88.8945 | 190 | 15 | 192 | 28 | 27 | 96.4286 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 92.2217 | 93.0556 | 91.4027 | 66.4134 | 201 | 15 | 202 | 19 | 19 | 100.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 85.0654 | 98.4227 | 74.9004 | 87.7501 | 936 | 15 | 940 | 315 | 251 | 79.6825 | |
| mlin-fermikit | SNP | ti | HG002complexvar | hetalt | 96.0000 | 92.7536 | 99.4819 | 33.9041 | 192 | 15 | 192 | 1 | 1 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.8049 | 78.2609 | 100.0000 | 87.5000 | 54 | 15 | 1 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 98.3498 | 96.7532 | 100.0000 | 68.3333 | 447 | 15 | 19 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | map_siren | hetalt | 90.1961 | 82.1429 | 100.0000 | 94.0476 | 69 | 15 | 5 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | segdup | * | 98.3734 | 98.6401 | 98.1081 | 95.0976 | 1088 | 15 | 1089 | 21 | 6 | 28.5714 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 63.9167 | 73.6842 | 56.4356 | 98.6567 | 42 | 15 | 57 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 77.9177 | 88.5496 | 69.5652 | 87.5000 | 116 | 15 | 192 | 84 | 9 | 10.7143 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 78.1655 | 88.8889 | 69.7509 | 87.5883 | 120 | 15 | 196 | 85 | 9 | 10.5882 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 84.3557 | 82.3529 | 86.4583 | 93.8184 | 70 | 15 | 83 | 13 | 6 | 46.1538 | |
| qzeng-custom | INDEL | I16_PLUS | HG002complexvar | homalt | 87.9947 | 95.1456 | 81.8436 | 65.5106 | 294 | 15 | 293 | 65 | 35 | 53.8462 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 92.8230 | 86.6071 | 100.0000 | 66.1202 | 97 | 15 | 62 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | het | 84.5932 | 97.4619 | 74.7264 | 88.6901 | 576 | 15 | 751 | 254 | 66 | 25.9843 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | hetalt | 0.0000 | 71.1538 | 0.0000 | 0.0000 | 37 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | homalt | 62.0102 | 46.4286 | 93.3333 | 84.5361 | 13 | 15 | 14 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 38.3333 | 68.7500 | 0 | 15 | 23 | 37 | 20 | 54.0541 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | * | 89.9579 | 95.1613 | 85.2941 | 90.0943 | 295 | 15 | 493 | 85 | 27 | 31.7647 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 67.7557 | 87.7049 | 55.2000 | 61.5975 | 107 | 15 | 138 | 112 | 75 | 66.9643 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 31.8182 | 0.0000 | 0.0000 | 7 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | segdup | het | 97.2186 | 97.8324 | 96.6125 | 94.2604 | 677 | 15 | 713 | 25 | 3 | 12.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 69.4006 | 59.4595 | 83.3333 | 67.5676 | 22 | 15 | 10 | 2 | 2 | 100.0000 | |