PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57651-57700 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 79.3672 | 73.6842 | 86.0000 | 99.4308 | 42 | 15 | 43 | 7 | 4 | 57.1429 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 90.3657 | 84.5361 | 97.0588 | 20.9302 | 82 | 15 | 33 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m1_e0 | het | 92.5000 | 88.0952 | 97.3684 | 82.6879 | 111 | 15 | 148 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.2401 | 97.2678 | 97.2125 | 76.6096 | 534 | 15 | 558 | 16 | 13 | 81.2500 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.6794 | 99.6260 | 97.7506 | 58.4645 | 3996 | 15 | 3998 | 92 | 11 | 11.9565 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.8922 | 93.2127 | 64.0000 | 92.1573 | 206 | 15 | 208 | 117 | 11 | 9.4017 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.7826 | 85.1485 | 66.6667 | 94.5791 | 86 | 15 | 82 | 41 | 9 | 21.9512 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 51.4286 | 64.2857 | 42.8571 | 93.8442 | 27 | 15 | 21 | 28 | 1 | 3.5714 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.9738 | 99.7961 | 98.1650 | 37.3497 | 7340 | 15 | 7008 | 131 | 12 | 9.1603 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.4522 | 98.1108 | 75.6868 | 87.8606 | 779 | 15 | 551 | 177 | 16 | 9.0396 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.1371 | 99.6801 | 90.9901 | 43.0795 | 4674 | 15 | 4393 | 435 | 14 | 3.2184 | |
| gduggal-bwafb | INDEL | * | func_cds | het | 94.3524 | 92.9907 | 95.7547 | 43.4667 | 199 | 15 | 203 | 9 | 7 | 77.7778 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.1148 | 70.0000 | 99.3007 | 50.8591 | 35 | 15 | 142 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | het | 94.6019 | 92.1053 | 97.2376 | 95.3423 | 175 | 15 | 176 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | het | 95.1279 | 92.8571 | 97.5124 | 95.5003 | 195 | 15 | 196 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | het | 95.1515 | 92.8910 | 97.5248 | 95.5943 | 196 | 15 | 197 | 5 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m1_e0 | * | 97.6949 | 97.9079 | 97.4828 | 88.4422 | 702 | 15 | 852 | 22 | 12 | 54.5455 | |
| eyeh-varpipe | INDEL | D1_5 | map_l150_m2_e0 | * | 97.8351 | 98.0341 | 97.6369 | 88.8302 | 748 | 15 | 909 | 22 | 12 | 54.5455 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 84.7659 | 96.9199 | 75.3205 | 52.5114 | 472 | 15 | 470 | 154 | 152 | 98.7013 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 69.2308 | 54.5455 | 94.7368 | 83.3333 | 18 | 15 | 36 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | homalt | 70.3704 | 55.8824 | 95.0000 | 90.0990 | 19 | 15 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | het | 92.5331 | 98.8057 | 87.0093 | 88.9275 | 1241 | 15 | 1219 | 182 | 48 | 26.3736 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | het | 92.4908 | 98.8170 | 86.9258 | 89.0233 | 1253 | 15 | 1230 | 185 | 49 | 26.4865 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 97.5113 | 95.7020 | 99.3902 | 79.6400 | 334 | 15 | 326 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 97.6160 | 95.8791 | 99.4169 | 80.7412 | 349 | 15 | 341 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 59.4595 | 59.4595 | 59.4595 | 84.3882 | 22 | 15 | 22 | 15 | 6 | 40.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 67.0213 | 64.2857 | 70.0000 | 99.4553 | 27 | 15 | 28 | 12 | 5 | 41.6667 | |
| jpowers-varprowl | INDEL | D6_15 | map_l100_m2_e1 | het | 73.3945 | 88.8889 | 62.5000 | 87.0095 | 120 | 15 | 120 | 72 | 69 | 95.8333 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m1_e0 | * | 81.6901 | 79.4521 | 84.0580 | 91.6566 | 58 | 15 | 58 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | * | 76.3282 | 68.0851 | 86.8421 | 91.3832 | 32 | 15 | 33 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.1689 | 87.7049 | 73.8255 | 66.0592 | 107 | 15 | 110 | 39 | 39 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 65.4545 | 54.5455 | 81.8182 | 90.6780 | 18 | 15 | 18 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | * | 53.3333 | 44.4444 | 66.6667 | 94.6429 | 12 | 15 | 12 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.5827 | 98.8772 | 98.2900 | 65.3261 | 1321 | 15 | 1322 | 23 | 8 | 34.7826 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.5344 | 98.2456 | 98.8249 | 66.8743 | 840 | 15 | 841 | 10 | 0 | 0.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7225 | 97.5369 | 97.9087 | 80.2849 | 594 | 15 | 515 | 11 | 8 | 72.7273 | |
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8267 | 99.9315 | 99.7221 | 75.0916 | 21884 | 15 | 21888 | 61 | 59 | 96.7213 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.4223 | 99.8206 | 99.0272 | 61.0885 | 8345 | 15 | 8347 | 82 | 80 | 97.5610 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.4223 | 99.8206 | 99.0272 | 61.0885 | 8345 | 15 | 8347 | 82 | 80 | 97.5610 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 98.6492 | 98.8057 | 98.4933 | 82.5249 | 1241 | 15 | 1242 | 19 | 5 | 26.3158 | |
| jli-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 98.6620 | 98.8170 | 98.5075 | 82.6685 | 1253 | 15 | 1254 | 19 | 5 | 26.3158 | |
| jli-custom | INDEL | D1_5 | map_siren | het | 99.2764 | 99.3412 | 99.2116 | 78.6894 | 2262 | 15 | 2265 | 18 | 3 | 16.6667 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 90.8127 | 85.8491 | 96.3855 | 84.5149 | 91 | 15 | 80 | 3 | 1 | 33.3333 | |