PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57551-57600 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.5913 | 99.6283 | 91.8687 | 63.3516 | 3752 | 14 | 3751 | 332 | 329 | 99.0964 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1405 | 97.7087 | 94.6218 | 72.0263 | 597 | 14 | 563 | 32 | 32 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 95.5913 | 99.6283 | 91.8687 | 63.3516 | 3752 | 14 | 3751 | 332 | 329 | 99.0964 | |
| ckim-dragen | INDEL | I1_5 | HG002compoundhet | het | 97.0139 | 98.3529 | 95.7108 | 85.3685 | 836 | 14 | 781 | 35 | 32 | 91.4286 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | het | 95.6989 | 95.7055 | 95.6923 | 87.6614 | 312 | 14 | 311 | 14 | 1 | 7.1429 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.8351 | 98.1132 | 99.5677 | 73.2460 | 728 | 14 | 691 | 3 | 3 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.2924 | 99.2063 | 99.3785 | 88.6959 | 1750 | 14 | 1759 | 11 | 11 | 100.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.6674 | 99.7924 | 99.5426 | 42.2165 | 6730 | 14 | 6747 | 31 | 2 | 6.4516 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3936 | 99.0937 | 99.6953 | 60.8166 | 1640 | 15 | 1636 | 5 | 3 | 60.0000 | |
| ckim-dragen | INDEL | D6_15 | map_siren | * | 97.6267 | 97.0530 | 98.2072 | 86.4726 | 494 | 15 | 493 | 9 | 2 | 22.2222 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.9736 | 94.7552 | 99.2982 | 55.3292 | 271 | 15 | 283 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0437 | 91.5730 | 98.7879 | 71.6007 | 163 | 15 | 163 | 2 | 1 | 50.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7361 | 99.7595 | 99.7127 | 70.2512 | 6221 | 15 | 6248 | 18 | 14 | 77.7778 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7111 | 99.6899 | 99.7323 | 69.3066 | 4822 | 15 | 4843 | 13 | 10 | 76.9231 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 98.3749 | 0.0000 | 0.0000 | 908 | 15 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l150_m0_e0 | het | 93.0816 | 95.6012 | 90.6915 | 92.2394 | 326 | 15 | 341 | 35 | 5 | 14.2857 | |
| cchapple-custom | INDEL | * | map_l150_m2_e0 | homalt | 97.9014 | 96.8815 | 98.9429 | 87.9521 | 466 | 15 | 468 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | * | map_l150_m2_e1 | homalt | 97.8487 | 96.9512 | 98.7629 | 87.9353 | 477 | 15 | 479 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | * | map_l250_m1_e0 | * | 93.3027 | 95.0820 | 91.5888 | 95.3992 | 290 | 15 | 294 | 27 | 3 | 11.1111 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | * | 93.5413 | 95.4683 | 91.6905 | 95.6635 | 316 | 15 | 320 | 29 | 3 | 10.3448 | |
| cchapple-custom | INDEL | * | map_l250_m2_e1 | * | 93.5790 | 95.4955 | 91.7379 | 95.7583 | 318 | 15 | 322 | 29 | 3 | 10.3448 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 82.5297 | 77.9412 | 87.6923 | 96.3565 | 53 | 15 | 57 | 8 | 4 | 50.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m2_e0 | het | 94.8879 | 97.0817 | 92.7911 | 88.6129 | 499 | 15 | 502 | 39 | 4 | 10.2564 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.0553 | 99.6017 | 96.5562 | 49.9027 | 3751 | 15 | 3729 | 133 | 130 | 97.7444 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.0553 | 99.6017 | 96.5562 | 49.9027 | 3751 | 15 | 3729 | 133 | 130 | 97.7444 | |
| cchapple-custom | INDEL | D6_15 | map_siren | het | 94.8724 | 94.6429 | 95.1031 | 81.6462 | 265 | 15 | 369 | 19 | 8 | 42.1053 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4505 | 99.3666 | 99.5347 | 87.4509 | 2353 | 15 | 2353 | 11 | 10 | 90.9091 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.7595 | 99.7595 | 99.7595 | 70.6652 | 6221 | 15 | 6221 | 15 | 12 | 80.0000 | |
| ckim-gatk | SNP | ti | func_cds | * | 99.6887 | 99.8912 | 99.4870 | 29.0714 | 13772 | 15 | 13770 | 71 | 1 | 1.4085 | |
| ckim-isaac | INDEL | * | map_l250_m0_e0 | homalt | 57.1429 | 40.0000 | 100.0000 | 96.3235 | 10 | 15 | 10 | 0 | 0 | ||
| ciseli-custom | SNP | * | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | * | map_l100_m2_e0 | hetalt | 72.0000 | 64.2857 | 81.8182 | 76.5957 | 27 | 15 | 27 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 73.3002 | 96.8017 | 58.9809 | 87.2316 | 454 | 15 | 463 | 322 | 72 | 22.3602 | |
| ciseli-custom | SNP | tv | map_l100_m1_e0 | hetalt | 71.2329 | 63.4146 | 81.2500 | 73.7705 | 26 | 15 | 26 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | tv | map_l100_m2_e0 | hetalt | 72.0000 | 64.2857 | 81.8182 | 76.5957 | 27 | 15 | 27 | 6 | 5 | 83.3333 | |
| ciseli-custom | SNP | tv | map_l100_m2_e1 | hetalt | 71.7949 | 65.1163 | 80.0000 | 75.6944 | 28 | 15 | 28 | 7 | 6 | 85.7143 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.3008 | 97.1963 | 99.4307 | 73.6236 | 520 | 15 | 524 | 3 | 3 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l150_m0_e0 | * | 96.1418 | 97.0817 | 95.2199 | 92.6863 | 499 | 15 | 498 | 25 | 4 | 16.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | * | 95.3077 | 95.1613 | 95.4545 | 87.8309 | 295 | 15 | 294 | 14 | 3 | 21.4286 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m1_e0 | het | 94.8942 | 94.9833 | 94.8052 | 89.4916 | 284 | 15 | 292 | 16 | 2 | 12.5000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.2210 | 89.9329 | 98.9384 | 59.8807 | 134 | 15 | 466 | 5 | 5 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.5313 | 97.5124 | 99.5716 | 47.3892 | 588 | 15 | 2789 | 12 | 10 | 83.3333 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.1802 | 96.7672 | 99.6350 | 61.0934 | 449 | 15 | 1092 | 4 | 4 | 100.0000 | |
| cchapple-custom | SNP | * | func_cds | * | 99.7855 | 99.9174 | 99.6539 | 26.7611 | 18135 | 15 | 18142 | 63 | 1 | 1.5873 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8601 | 99.8647 | 99.8556 | 55.3095 | 11069 | 15 | 11065 | 16 | 7 | 43.7500 | |
| cchapple-custom | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.2140 | 99.2589 | 99.1691 | 72.0797 | 2009 | 15 | 2029 | 17 | 3 | 17.6471 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.2818 | 96.6216 | 100.0000 | 72.0930 | 429 | 15 | 420 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4642 | 99.1114 | 99.8195 | 47.8833 | 1673 | 15 | 1659 | 3 | 3 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8854 | 99.8625 | 99.9082 | 58.4392 | 10896 | 15 | 10886 | 10 | 6 | 60.0000 | |