PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57401-57450 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e1 | * | 98.2028 | 98.2005 | 98.2051 | 88.8460 | 764 | 14 | 766 | 14 | 7 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8041 | 98.6070 | 99.0020 | 64.5686 | 991 | 14 | 992 | 10 | 9 | 90.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | * | 94.9416 | 94.5736 | 95.3125 | 85.7936 | 244 | 14 | 244 | 12 | 6 | 50.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | * | 95.0570 | 94.6970 | 95.4198 | 86.1887 | 250 | 14 | 250 | 12 | 6 | 50.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6796 | 99.7755 | 99.5839 | 69.4549 | 6222 | 14 | 6222 | 26 | 19 | 73.0769 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7825 | 99.5948 | 99.9709 | 63.5497 | 3441 | 14 | 3441 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9097 | 99.8737 | 99.9458 | 56.0006 | 11070 | 14 | 11066 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 99.3569 | 99.3083 | 99.4056 | 69.7301 | 2010 | 14 | 2007 | 12 | 5 | 41.6667 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.6224 | 99.6697 | 99.5753 | 80.0565 | 4224 | 14 | 4220 | 18 | 10 | 55.5556 | |
| rpoplin-dv42 | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8811 | 99.8613 | 99.9009 | 61.7921 | 10083 | 14 | 10083 | 10 | 2 | 20.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.2210 | 98.8562 | 99.5885 | 62.9799 | 1210 | 14 | 1210 | 5 | 5 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e0 | homalt | 99.5125 | 99.1995 | 99.8274 | 87.5412 | 1735 | 14 | 1735 | 3 | 3 | 100.0000 | |
| egarrison-hhga | SNP | ti | map_l250_m2_e1 | homalt | 99.5188 | 99.2099 | 99.8296 | 87.5758 | 1758 | 14 | 1758 | 3 | 3 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6482 | 99.3452 | 99.9530 | 35.3102 | 2124 | 14 | 2126 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l150_m1_e0 | homalt | 97.1058 | 96.9697 | 97.2424 | 89.3062 | 448 | 14 | 670 | 19 | 19 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | homalt | 96.9842 | 97.0894 | 96.8792 | 89.5683 | 467 | 14 | 714 | 23 | 23 | 100.0000 | |
| eyeh-varpipe | INDEL | * | map_l150_m2_e1 | homalt | 96.9748 | 97.1545 | 96.7957 | 89.6318 | 478 | 14 | 725 | 24 | 24 | 100.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.1899 | 99.0155 | 99.3649 | 88.4872 | 1408 | 14 | 1408 | 9 | 8 | 88.8889 | |
| ckim-vqsr | SNP | tv | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | map_l150_m0_e0 | * | 96.9996 | 97.2763 | 96.7245 | 93.1872 | 500 | 14 | 502 | 17 | 4 | 23.5294 | |
| dgrover-gatk | INDEL | D16_PLUS | HG002complexvar | het | 98.2761 | 98.7353 | 97.8211 | 68.7119 | 1093 | 14 | 853 | 19 | 9 | 47.3684 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.2637 | 97.8947 | 89.0511 | 87.2350 | 651 | 14 | 488 | 60 | 49 | 81.6667 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m0_e0 | * | 98.1515 | 98.3778 | 97.9263 | 86.5655 | 849 | 14 | 850 | 18 | 4 | 22.2222 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e0 | het | 98.6907 | 98.8854 | 98.4968 | 85.5954 | 1242 | 14 | 1245 | 19 | 3 | 15.7895 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | het | 98.7031 | 98.8959 | 98.5110 | 85.7047 | 1254 | 14 | 1257 | 19 | 3 | 15.7895 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | het | 99.2553 | 99.3852 | 99.1259 | 82.2139 | 2263 | 14 | 2268 | 20 | 1 | 5.0000 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 84.0909 | 72.5490 | 100.0000 | 42.6471 | 37 | 14 | 39 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 22.2222 | 12.5000 | 100.0000 | 95.1220 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 22.2222 | 12.5000 | 100.0000 | 95.2381 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 97.3510 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e0 | het | 21.0526 | 12.5000 | 66.6667 | 97.5806 | 2 | 14 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l150_m2_e1 | het | 21.0526 | 12.5000 | 66.6667 | 97.6190 | 2 | 14 | 2 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.3650 | 64.1026 | 91.4286 | 63.5417 | 25 | 14 | 32 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 61.9048 | 48.1481 | 86.6667 | 86.6071 | 13 | 14 | 13 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 45.8333 | 14 | 14 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 56.2500 | 39.1304 | 100.0000 | 60.0000 | 9 | 14 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 84.5899 | 76.6667 | 94.3396 | 70.0565 | 46 | 14 | 50 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I1_5 | segdup | het | 97.7612 | 97.3978 | 98.1273 | 94.4800 | 524 | 14 | 524 | 10 | 6 | 60.0000 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 96.3121 | 98.9474 | 93.8136 | 84.0303 | 1316 | 14 | 1107 | 73 | 64 | 87.6712 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7790 | 99.6566 | 99.9017 | 44.3228 | 4063 | 14 | 4066 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.6289 | 95.1389 | 96.1240 | 80.6306 | 274 | 14 | 248 | 10 | 7 | 70.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.7124 | 95.5272 | 100.0000 | 30.1402 | 299 | 14 | 299 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.3114 | 97.6783 | 98.9529 | 73.0099 | 589 | 14 | 567 | 6 | 2 | 33.3333 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.3822 | 96.3731 | 98.4127 | 91.0490 | 372 | 14 | 372 | 6 | 4 | 66.6667 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.1782 | 99.2063 | 99.1501 | 88.9866 | 1750 | 14 | 1750 | 15 | 13 | 86.6667 | |
| ckim-vqsr | SNP | * | map_l100_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.1308 | 2 | 14 | 2 | 0 | 0 | ||
| ckim-vqsr | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.3840 | 98.8562 | 99.9174 | 59.5119 | 1210 | 14 | 1210 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6889 | 99.4208 | 99.9584 | 73.0221 | 2403 | 14 | 2403 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 80.0000 | 68.1818 | 96.7742 | 97.3884 | 30 | 14 | 30 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.5295 | 93.9130 | 95.1542 | 63.9110 | 216 | 14 | 216 | 11 | 9 | 81.8182 | |