PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
57251-57300 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 17.0940 | 41.6667 | 10.7527 | 42.2360 | 10 | 14 | 10 | 83 | 83 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m1_e0 | het | 61.5385 | 53.3333 | 72.7273 | 92.3077 | 16 | 14 | 16 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | het | 61.5385 | 53.3333 | 72.7273 | 93.3535 | 16 | 14 | 16 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e1 | het | 61.5385 | 53.3333 | 72.7273 | 93.5103 | 16 | 14 | 16 | 6 | 6 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m1_e0 | * | 53.6585 | 44.0000 | 68.7500 | 94.2029 | 11 | 14 | 11 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e0 | * | 53.6585 | 44.0000 | 68.7500 | 95.0156 | 11 | 14 | 11 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | ti | HG002compoundhet | homalt | 92.3856 | 99.8107 | 85.9888 | 37.4563 | 7380 | 14 | 7383 | 1203 | 882 | 73.3167 | |
| jpowers-varprowl | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.8578 | 97.1545 | 98.5714 | 57.5022 | 478 | 14 | 483 | 7 | 5 | 71.4286 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | * | 81.9444 | 80.8219 | 83.0986 | 93.6036 | 59 | 14 | 59 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 79.1991 | 87.0370 | 72.6562 | 76.5138 | 94 | 14 | 93 | 35 | 35 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 43.9024 | 39.1304 | 50.0000 | 86.0465 | 9 | 14 | 9 | 9 | 8 | 88.8889 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 72.0930 | 68.8889 | 75.6098 | 76.1628 | 31 | 14 | 31 | 10 | 10 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | het | 94.1953 | 98.2716 | 90.4437 | 90.5024 | 796 | 14 | 795 | 84 | 29 | 34.5238 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 82.0654 | 92.0904 | 74.0088 | 72.2494 | 163 | 14 | 168 | 59 | 57 | 96.6102 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.5714 | 60.0000 | 80.0000 | 90.8425 | 21 | 14 | 20 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | SNP | * | func_cds | het | 99.3937 | 99.8746 | 98.9174 | 34.8349 | 11147 | 14 | 11147 | 122 | 2 | 1.6393 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 95.0613 | 99.1139 | 91.3271 | 69.3870 | 1566 | 14 | 1569 | 149 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.7332 | 99.6556 | 97.8277 | 50.1744 | 4051 | 14 | 4053 | 90 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 95.6108 | 99.3560 | 92.1377 | 74.6935 | 2160 | 14 | 2168 | 185 | 14 | 7.5676 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7530 | 99.7694 | 99.7366 | 55.3284 | 6058 | 14 | 6058 | 16 | 16 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.4001 | 93.6937 | 97.1698 | 60.5948 | 208 | 14 | 206 | 6 | 4 | 66.6667 | |
| gduggal-snapplat | SNP | tv | func_cds | homalt | 99.5875 | 99.1784 | 100.0000 | 26.2009 | 1690 | 14 | 1690 | 0 | 0 | ||
| gduggal-snapplat | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 42.8571 | 46.1538 | 40.0000 | 98.9510 | 12 | 14 | 12 | 18 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 95.3488 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | D16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | * | 94.5123 | 95.1557 | 93.8776 | 90.9427 | 275 | 14 | 276 | 18 | 5 | 27.7778 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | * | 79.6826 | 70.2128 | 92.1053 | 89.7849 | 33 | 14 | 35 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m1_e0 | het | 85.4139 | 78.1250 | 94.2029 | 79.5252 | 50 | 14 | 65 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 59.3672 | 76.6667 | 48.4375 | 84.0000 | 46 | 14 | 31 | 33 | 11 | 33.3333 | |
| gduggal-snapfb | INDEL | I6_15 | func_cds | * | 74.3590 | 67.4419 | 82.8571 | 33.9623 | 29 | 14 | 29 | 6 | 6 | 100.0000 | |
| gduggal-snapplat | INDEL | D16_PLUS | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | map_l250_m1_e0 | * | 36.3636 | 22.2222 | 100.0000 | 99.7183 | 4 | 14 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | map_l125_m1_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.2222 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e0 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.4026 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l125_m2_e1 | homalt | 11.7647 | 6.6667 | 50.0000 | 97.5309 | 1 | 14 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m1_e0 | het | 10.5263 | 6.6667 | 25.0000 | 96.8992 | 1 | 14 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l150_m2_e0 | het | 10.5263 | 6.6667 | 25.0000 | 97.2973 | 1 | 14 | 1 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | map_l125_m0_e0 | het | 90.1652 | 97.6150 | 83.7719 | 93.3586 | 573 | 14 | 573 | 111 | 27 | 24.3243 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | map_l125_m1_e0 | * | 81.2500 | 73.5849 | 90.6977 | 82.0084 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e0 | * | 81.2500 | 73.5849 | 90.6977 | 84.4765 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l125_m2_e1 | * | 81.2500 | 73.5849 | 90.6977 | 85.1724 | 39 | 14 | 39 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6666 | 99.3783 | 92.2222 | 67.1222 | 2238 | 14 | 2241 | 189 | 11 | 5.8201 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2893 | 99.6556 | 98.9258 | 48.4715 | 4051 | 14 | 4052 | 44 | 5 | 11.3636 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.6308 | 99.6416 | 93.7966 | 43.2141 | 3892 | 14 | 3901 | 258 | 11 | 4.2636 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 81.8789 | 99.0654 | 69.7740 | 90.1347 | 1484 | 14 | 1482 | 642 | 38 | 5.9190 | |
| gduggal-snapplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 44.1176 | 30.0000 | 83.3333 | 99.9060 | 6 | 14 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | homalt | 94.2676 | 90.5405 | 98.3146 | 84.3310 | 134 | 14 | 175 | 3 | 3 | 100.0000 | |