PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56701-56750 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 66.1090 | 79.0323 | 56.8182 | 83.1418 | 49 | 13 | 50 | 38 | 38 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 100.0000 | 0 | 13 | 0 | 0 | 0 | ||||
| jpowers-varprowl | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4312 | 90.9091 | 73.7430 | 94.9535 | 130 | 13 | 132 | 47 | 9 | 19.1489 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 81.5154 | 91.4474 | 73.5294 | 93.1267 | 139 | 13 | 150 | 54 | 3 | 5.5556 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4013 | 97.0721 | 99.7674 | 68.6817 | 431 | 13 | 429 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.6667 | 70.4545 | 100.0000 | 95.9420 | 31 | 13 | 28 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | het | 82.7586 | 73.4694 | 94.7368 | 66.9565 | 36 | 13 | 36 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | segdup | * | 98.9565 | 98.7724 | 99.1412 | 93.0766 | 1046 | 13 | 1039 | 9 | 3 | 33.3333 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.2332 | 97.3361 | 99.1471 | 75.0399 | 475 | 13 | 465 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.9091 | 84.3373 | 98.5915 | 47.0149 | 70 | 13 | 70 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2598 | 99.1413 | 99.3785 | 84.5990 | 1501 | 13 | 1439 | 9 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8931 | 99.7865 | 100.0000 | 53.0439 | 6075 | 13 | 6078 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8441 | 99.8073 | 99.8810 | 33.7603 | 6732 | 13 | 6714 | 8 | 1 | 12.5000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m1_e0 | homalt | 99.6340 | 99.4722 | 99.7963 | 86.3079 | 2450 | 13 | 2450 | 5 | 5 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e0 | homalt | 99.6459 | 99.5160 | 99.7760 | 87.2925 | 2673 | 13 | 2673 | 6 | 6 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | map_l250_m2_e1 | homalt | 99.6317 | 99.5217 | 99.7419 | 87.3537 | 2705 | 13 | 2705 | 7 | 7 | 100.0000 | |
| ltrigg-rtg1 | SNP | ti | func_cds | het | 99.6011 | 99.8471 | 99.3563 | 21.6630 | 8491 | 13 | 8490 | 55 | 1 | 1.8182 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.7961 | 99.2900 | 96.3466 | 63.0116 | 1818 | 13 | 1846 | 70 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.6187 | 98.4724 | 98.7654 | 85.1838 | 838 | 13 | 800 | 10 | 1 | 10.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m1_e0 | homalt | 98.9671 | 98.2240 | 99.7214 | 80.0832 | 719 | 13 | 716 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.4521 | 69.0476 | 93.5484 | 90.6627 | 29 | 13 | 29 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 77.9661 | 63.8889 | 100.0000 | 90.4959 | 23 | 13 | 23 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | homalt | 99.6165 | 99.4147 | 99.8192 | 66.9456 | 2208 | 13 | 2208 | 4 | 2 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 94.1211 | 89.6000 | 99.1228 | 23.4899 | 112 | 13 | 113 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l100_m1_e0 | homalt | 98.9405 | 98.9405 | 98.9405 | 82.3199 | 1214 | 13 | 1214 | 13 | 8 | 61.5385 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | * | 97.5703 | 97.4708 | 97.6699 | 99.3659 | 501 | 13 | 503 | 12 | 4 | 33.3333 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.9862 | 93.5323 | 94.4444 | 85.3550 | 188 | 13 | 187 | 11 | 5 | 45.4545 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8070 | 98.1869 | 99.4350 | 56.0248 | 704 | 13 | 704 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.7097 | 80.8824 | 98.2143 | 96.7098 | 55 | 13 | 55 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2174 | 92.0732 | 84.6715 | 84.6413 | 151 | 13 | 116 | 21 | 19 | 90.4762 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m1_e0 | * | 98.1894 | 98.1869 | 98.1919 | 88.2765 | 704 | 13 | 706 | 13 | 6 | 46.1538 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.2984 | 98.2962 | 98.3007 | 88.8468 | 750 | 13 | 752 | 13 | 6 | 46.1538 | |
| rpoplin-dv42 | INDEL | I16_PLUS | HG002complexvar | homalt | 96.5785 | 95.7929 | 97.3770 | 64.6991 | 296 | 13 | 297 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.3260 | 97.7233 | 98.9362 | 63.8924 | 558 | 13 | 558 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e0 | * | 98.1594 | 97.4952 | 98.8327 | 89.9117 | 506 | 13 | 508 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.2012 | 97.5518 | 98.8593 | 89.9733 | 518 | 13 | 520 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8463 | 99.7898 | 99.9029 | 55.0600 | 6171 | 13 | 6171 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3458 | 99.4510 | 99.2408 | 86.4188 | 2355 | 13 | 2353 | 18 | 14 | 77.7778 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 99.0344 | 98.9969 | 99.0719 | 86.7371 | 1283 | 13 | 1281 | 12 | 9 | 75.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6890 | 99.4621 | 99.9169 | 79.7698 | 2404 | 13 | 2406 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.8882 | 99.8789 | 99.8975 | 38.7986 | 10719 | 13 | 10717 | 11 | 5 | 45.4545 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.4309 | 80.8824 | 100.0000 | 97.0478 | 55 | 13 | 55 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.6667 | 70.4545 | 100.0000 | 97.3368 | 31 | 13 | 31 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 89.6000 | 81.1594 | 100.0000 | 56.2500 | 56 | 13 | 56 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | het | 98.0506 | 97.8003 | 98.3022 | 82.9226 | 578 | 13 | 579 | 10 | 1 | 10.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | * | 97.7751 | 97.3790 | 98.1744 | 86.5042 | 483 | 13 | 484 | 9 | 2 | 22.2222 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | het | 97.7008 | 97.5096 | 97.8927 | 87.5328 | 509 | 13 | 511 | 11 | 2 | 18.1818 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6854 | 97.7431 | 99.6460 | 66.1879 | 563 | 13 | 563 | 2 | 2 | 100.0000 | |