PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56551-56600 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 74.6450 | 72.7273 | 76.6667 | 92.3274 | 32 | 12 | 23 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 75.3210 | 73.3333 | 77.4194 | 92.1717 | 33 | 12 | 24 | 7 | 3 | 42.8571 | |
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | het | 92.5065 | 93.2292 | 91.7949 | 87.1287 | 179 | 13 | 179 | 16 | 2 | 12.5000 | |
| gduggal-snapplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | D6_15 | map_l150_m0_e0 | het | 48.6957 | 35.0000 | 80.0000 | 97.7578 | 7 | 13 | 4 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | I1_5 | tech_badpromoters | * | 47.3684 | 40.9091 | 56.2500 | 86.0870 | 9 | 13 | 9 | 7 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 18.7500 | 0.0000 | 0.0000 | 3 | 13 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | * | map_l250_m1_e0 | homalt | 92.6495 | 88.0734 | 97.7273 | 92.8026 | 96 | 13 | 129 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | het | 30.0000 | 18.7500 | 75.0000 | 95.0617 | 3 | 13 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e1 | het | 30.0000 | 18.7500 | 75.0000 | 95.1220 | 3 | 13 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | func_cds | * | 87.5742 | 91.8239 | 83.7004 | 42.8212 | 146 | 13 | 190 | 37 | 33 | 89.1892 | |
| gduggal-snapvard | INDEL | D1_5 | func_cds | homalt | 90.3704 | 82.4324 | 100.0000 | 25.8824 | 61 | 13 | 63 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | het | 84.5604 | 78.6885 | 91.3793 | 74.1071 | 48 | 13 | 53 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e1 | het | 84.5604 | 78.6885 | 91.3793 | 74.8918 | 48 | 13 | 53 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 13 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | het | 85.4186 | 98.2094 | 75.5757 | 89.1583 | 713 | 13 | 919 | 297 | 91 | 30.6397 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | homalt | 59.7285 | 45.8333 | 85.7143 | 82.2785 | 11 | 13 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m0_e0 | * | 74.1899 | 72.3404 | 76.1364 | 88.0759 | 34 | 13 | 67 | 21 | 11 | 52.3810 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m1_e0 | * | 22.9885 | 13.3333 | 83.3333 | 78.5714 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e0 | * | 22.9885 | 13.3333 | 83.3333 | 81.4433 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l125_m2_e1 | * | 22.9885 | 13.3333 | 83.3333 | 81.6327 | 2 | 13 | 15 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I1_5 | func_cds | * | 92.6851 | 92.7778 | 92.5926 | 34.6021 | 167 | 13 | 175 | 14 | 11 | 78.5714 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e1 | het | 89.6492 | 98.3951 | 82.3311 | 88.9834 | 797 | 13 | 1109 | 238 | 111 | 46.6387 | |
| gduggal-snapvard | SNP | ti | tech_badpromoters | * | 90.5660 | 84.7059 | 97.2973 | 51.6340 | 72 | 13 | 72 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.3173 | 97.2973 | 99.3590 | 56.7867 | 468 | 13 | 465 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 13 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | het | 91.5991 | 98.9650 | 85.2538 | 88.9688 | 1243 | 13 | 1243 | 215 | 63 | 29.3023 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | het | 91.5448 | 98.9748 | 85.1525 | 89.0375 | 1255 | 13 | 1256 | 219 | 64 | 29.2237 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 45.0000 | 40.9091 | 50.0000 | 82.1782 | 9 | 13 | 9 | 9 | 8 | 88.8889 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.7492 | 96.2428 | 82.3383 | 73.2890 | 333 | 13 | 331 | 71 | 64 | 90.1408 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.3272 | 98.3182 | 85.2643 | 79.7078 | 760 | 13 | 758 | 131 | 122 | 93.1298 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m1_e0 | het | 94.4317 | 98.3269 | 90.8333 | 89.6462 | 764 | 13 | 763 | 77 | 26 | 33.7662 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e0 | het | 94.1968 | 98.3607 | 90.3712 | 90.4265 | 780 | 13 | 779 | 83 | 29 | 34.9398 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | homalt | 97.3294 | 96.1877 | 98.4985 | 80.2725 | 328 | 13 | 328 | 5 | 3 | 60.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | homalt | 97.3451 | 96.2099 | 98.5075 | 80.6134 | 330 | 13 | 330 | 5 | 3 | 60.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 100.0000 | 0 | 13 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.3583 | 99.6679 | 91.4059 | 82.1531 | 3902 | 13 | 3914 | 368 | 228 | 61.9565 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4008 | 99.8073 | 97.0334 | 44.7618 | 6732 | 13 | 6738 | 206 | 131 | 63.5922 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.2746 | 87.2549 | 66.1871 | 95.4411 | 89 | 13 | 92 | 47 | 3 | 6.3830 | |
| ghariani-varprowl | SNP | ti | HG002compoundhet | homalt | 92.9457 | 99.8242 | 86.9540 | 37.0935 | 7381 | 13 | 7385 | 1108 | 880 | 79.4224 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2784 | 99.5607 | 95.0984 | 65.7462 | 2946 | 13 | 2949 | 152 | 10 | 6.5790 | |
| ghariani-varprowl | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||