PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56351-56400 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.4855 | 86.9565 | 98.7654 | 53.7143 | 80 | 12 | 80 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | map_l150_m0_e0 | homalt | 99.5726 | 99.7065 | 99.4390 | 76.7349 | 4077 | 12 | 4077 | 23 | 8 | 34.7826 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.8432 | 99.7787 | 99.9077 | 76.2675 | 5411 | 12 | 5411 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5469 | 99.1667 | 99.9300 | 67.8732 | 1428 | 12 | 1428 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.2845 | 98.6871 | 99.8893 | 67.1756 | 902 | 12 | 902 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8432 | 99.7787 | 99.9077 | 76.2675 | 5411 | 12 | 5411 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | SNP | tv | map_l100_m0_e0 | homalt | 99.6880 | 99.6880 | 99.6880 | 65.5500 | 3834 | 12 | 3834 | 12 | 4 | 33.3333 | |
| hfeng-pmm2 | SNP | tv | map_l125_m1_e0 | homalt | 99.7782 | 99.7952 | 99.7612 | 67.4839 | 5848 | 12 | 5848 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e0 | homalt | 99.7840 | 99.8006 | 99.7674 | 69.8673 | 6005 | 12 | 6005 | 14 | 5 | 35.7143 | |
| hfeng-pmm2 | SNP | tv | map_l125_m2_e1 | homalt | 99.7860 | 99.8024 | 99.7696 | 69.9104 | 6062 | 12 | 6062 | 14 | 5 | 35.7143 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.6000 | 82.3529 | 98.2456 | 96.4128 | 56 | 12 | 56 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 83.1169 | 72.7273 | 96.9697 | 96.7836 | 32 | 12 | 32 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3302 | 98.8571 | 99.8079 | 61.2435 | 1038 | 12 | 1039 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 89.0909 | 80.3279 | 100.0000 | 55.0459 | 49 | 12 | 49 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.8621 | 92.0530 | 100.0000 | 48.5915 | 139 | 12 | 146 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_siren | het | 95.2727 | 91.6084 | 99.2424 | 84.2670 | 131 | 12 | 131 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.1918 | 71.4286 | 96.7742 | 97.3067 | 30 | 12 | 30 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | * | map_l150_m0_e0 | homalt | 99.5848 | 99.7065 | 99.4633 | 76.6851 | 4077 | 12 | 4077 | 22 | 7 | 31.8182 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7169 | 99.5157 | 99.9189 | 27.4838 | 2466 | 12 | 2465 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | homalt | 99.6880 | 99.6880 | 99.6880 | 65.4385 | 3834 | 12 | 3834 | 12 | 4 | 33.3333 | |
| hfeng-pmm1 | SNP | tv | map_l125_m1_e0 | homalt | 99.7867 | 99.7952 | 99.7782 | 67.3918 | 5848 | 12 | 5848 | 13 | 5 | 38.4615 | |
| hfeng-pmm1 | SNP | tv | map_l125_m2_e0 | homalt | 99.7923 | 99.8006 | 99.7840 | 69.7785 | 6005 | 12 | 6005 | 13 | 5 | 38.4615 | |
| hfeng-pmm1 | SNP | tv | map_l125_m2_e1 | homalt | 99.7942 | 99.8024 | 99.7860 | 69.8227 | 6062 | 12 | 6062 | 13 | 5 | 38.4615 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3457 | 98.6999 | 100.0000 | 30.6231 | 911 | 12 | 913 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.6703 | 98.8971 | 98.4446 | 64.4784 | 1076 | 12 | 1076 | 17 | 12 | 70.5882 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.2480 | 98.0066 | 94.5513 | 51.4774 | 590 | 12 | 590 | 34 | 33 | 97.0588 | |
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.2915 | 97.2540 | 93.4066 | 47.6410 | 425 | 12 | 425 | 30 | 30 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.3614 | 86.2069 | 94.9367 | 84.3874 | 75 | 12 | 75 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.8621 | 92.0530 | 100.0000 | 48.9510 | 139 | 12 | 146 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | HG002compoundhet | homalt | 99.8887 | 99.8887 | 99.8887 | 35.3481 | 10770 | 12 | 10770 | 12 | 11 | 91.6667 | |
| hfeng-pmm2 | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.1918 | 71.4286 | 96.7742 | 97.3299 | 30 | 12 | 30 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l125_m0_e0 | homalt | 99.4597 | 99.4597 | 99.4597 | 72.3171 | 2209 | 12 | 2209 | 12 | 4 | 33.3333 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.2378 | 98.6999 | 99.7817 | 29.1570 | 911 | 12 | 914 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | * | map_l150_m0_e0 | * | 91.3832 | 97.6654 | 85.8603 | 94.2048 | 502 | 12 | 504 | 83 | 3 | 3.6145 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.1621 | 97.7230 | 87.2000 | 81.7983 | 515 | 12 | 436 | 64 | 51 | 79.6875 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.7060 | 96.3415 | 99.1098 | 37.3606 | 316 | 12 | 334 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 83.3333 | 86.2069 | 80.6452 | 94.7428 | 75 | 12 | 75 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.8710 | 86.6667 | 81.2500 | 95.3033 | 78 | 12 | 78 | 18 | 6 | 33.3333 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | * | 89.0690 | 91.6084 | 86.6667 | 94.5750 | 131 | 12 | 130 | 20 | 3 | 15.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l100_m1_e0 | het | 93.4933 | 99.0074 | 88.5609 | 87.9481 | 1197 | 12 | 1200 | 155 | 10 | 6.4516 | |
| jlack-gatk | INDEL | D1_5 | map_siren | het | 95.7195 | 99.4730 | 92.2389 | 84.5589 | 2265 | 12 | 2270 | 191 | 11 | 5.7592 | |
| jlack-gatk | INDEL | D1_5 | map_siren | homalt | 99.3983 | 98.9726 | 99.8277 | 79.2900 | 1156 | 12 | 1159 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | segdup | * | 95.5828 | 98.9121 | 92.4704 | 95.7903 | 1091 | 12 | 1093 | 89 | 5 | 5.6180 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 88.6792 | 79.6610 | 100.0000 | 71.7391 | 47 | 12 | 52 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.3077 | 85.7143 | 100.0000 | 59.7765 | 72 | 12 | 72 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8242 | 99.0991 | 98.5507 | 72.0171 | 1320 | 12 | 1292 | 19 | 15 | 78.9474 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 97.3289 | 98.9813 | 95.7307 | 72.6231 | 1166 | 12 | 1166 | 52 | 52 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m1_e0 | * | 96.5825 | 98.5542 | 94.6882 | 89.3152 | 818 | 12 | 820 | 46 | 4 | 8.6957 | |
| jlack-gatk | INDEL | I1_5 | segdup | * | 95.3193 | 98.8669 | 92.0175 | 95.4565 | 1047 | 12 | 1049 | 91 | 3 | 3.2967 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.5769 | 96.6102 | 98.5632 | 70.4835 | 342 | 12 | 343 | 5 | 5 | 100.0000 | |