PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56201-56250 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 92.8529 | 99.4937 | 87.0432 | 60.7107 | 2358 | 12 | 2358 | 351 | 351 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.6517 | 71.4286 | 87.5000 | 98.7886 | 30 | 12 | 35 | 5 | 2 | 40.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | * | 91.9974 | 88.3495 | 95.9596 | 87.8378 | 91 | 12 | 95 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 38.8889 | 25.0000 | 87.5000 | 66.6667 | 4 | 12 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 90.0901 | 89.2857 | 90.9091 | 84.7575 | 100 | 12 | 60 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_siren | homalt | 98.9302 | 99.0099 | 98.8506 | 78.8211 | 1200 | 12 | 1204 | 14 | 8 | 57.1429 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 82.4742 | 76.9231 | 88.8889 | 57.1429 | 40 | 12 | 24 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.0010 | 80.6452 | 94.4444 | 79.8319 | 50 | 12 | 68 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.2892 | 71.4286 | 73.1707 | 97.3325 | 30 | 12 | 30 | 11 | 2 | 18.1818 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 69.9603 | 92.1053 | 56.4000 | 92.3571 | 140 | 12 | 141 | 109 | 7 | 6.4220 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.9127 | 81.8182 | 59.5238 | 95.2246 | 54 | 12 | 50 | 34 | 3 | 8.8235 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.9908 | 99.7206 | 92.5300 | 66.9362 | 4283 | 12 | 4162 | 336 | 9 | 2.6786 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4785 | 99.4671 | 99.4898 | 52.4587 | 2240 | 12 | 2145 | 11 | 2 | 18.1818 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7839 | 99.8029 | 99.7650 | 51.9403 | 6076 | 12 | 5943 | 14 | 7 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | homalt | 99.7393 | 99.7065 | 99.7720 | 78.7376 | 4077 | 12 | 3939 | 9 | 4 | 44.4444 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4666 | 99.0196 | 94.0419 | 60.5213 | 1212 | 12 | 1168 | 74 | 18 | 24.3243 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 69.9877 | 92.1053 | 56.4356 | 92.2038 | 140 | 12 | 114 | 88 | 4 | 4.5455 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4574 | 99.5649 | 99.3502 | 34.3868 | 2746 | 12 | 2599 | 17 | 7 | 41.1765 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 68.1729 | 96.6574 | 52.6555 | 45.4921 | 347 | 12 | 347 | 312 | 311 | 99.6795 | |
| gduggal-bwafb | INDEL | * | segdup | homalt | 98.7493 | 98.7500 | 98.7487 | 93.7209 | 948 | 12 | 947 | 12 | 11 | 91.6667 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 60.4796 | 98.4043 | 43.6551 | 42.6260 | 740 | 12 | 805 | 1039 | 978 | 94.1290 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.5555 | 98.1735 | 98.9404 | 72.7338 | 645 | 12 | 747 | 8 | 3 | 37.5000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 76.3850 | 99.7475 | 61.8895 | 40.6948 | 4741 | 12 | 4828 | 2973 | 2967 | 99.7982 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | het | 98.0166 | 97.9695 | 98.0636 | 83.8904 | 579 | 12 | 709 | 14 | 4 | 28.5714 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m1_e0 | het | 98.1053 | 98.3471 | 97.8648 | 84.7393 | 714 | 12 | 825 | 18 | 5 | 27.7778 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e0 | het | 98.2018 | 98.4293 | 97.9753 | 85.2570 | 752 | 12 | 871 | 18 | 5 | 27.7778 | |
| eyeh-varpipe | INDEL | D1_5 | map_l125_m2_e1 | het | 98.1609 | 98.4416 | 97.8818 | 85.3694 | 758 | 12 | 878 | 19 | 6 | 31.5789 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 75.6646 | 71.4286 | 80.4348 | 98.6240 | 30 | 12 | 37 | 9 | 7 | 77.7778 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | het | 91.2869 | 91.1111 | 91.4634 | 82.8452 | 123 | 12 | 150 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 34.8624 | 25.0000 | 57.5758 | 41.0714 | 4 | 12 | 19 | 14 | 14 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 14.2857 | 7.6923 | 100.0000 | 45.8333 | 1 | 12 | 13 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | map_siren | homalt | 58.4071 | 42.8571 | 91.6667 | 75.0000 | 9 | 12 | 11 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | map_l100_m0_e0 | * | 97.7243 | 97.7901 | 97.6585 | 83.5553 | 531 | 12 | 1001 | 24 | 17 | 70.8333 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 85.4239 | 80.6452 | 90.8046 | 75.2137 | 50 | 12 | 158 | 16 | 16 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 12 | 1 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 64.7059 | 10 | 12 | 30 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 66.2921 | 10 | 12 | 30 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 62.5000 | 45.4545 | 100.0000 | 65.9341 | 10 | 12 | 31 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | het | 88.6308 | 98.5965 | 80.4948 | 92.7959 | 843 | 12 | 846 | 205 | 44 | 21.4634 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | * | 90.7857 | 97.5806 | 84.8754 | 90.3137 | 484 | 12 | 477 | 85 | 9 | 10.5882 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 1 | 12 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 89.2857 | 4 | 12 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.6923 | 100.0000 | 1 | 12 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.6923 | 55.5556 | 60.0000 | 97.8032 | 15 | 12 | 15 | 10 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 67.8492 | 81.8182 | 57.9545 | 95.9781 | 54 | 12 | 51 | 37 | 7 | 18.9189 | |