PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
56001-56050 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | * | segdup | homalt | 99.8140 | 99.8883 | 99.7398 | 89.1939 | 10731 | 12 | 10731 | 28 | 28 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | HG002compoundhet | homalt | 99.7770 | 99.8377 | 99.7163 | 30.8389 | 7382 | 12 | 7382 | 21 | 20 | 95.2381 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.7622 | 99.7519 | 99.7725 | 68.8442 | 4825 | 12 | 4825 | 11 | 7 | 63.6364 | |
| raldana-dualsentieon | SNP | * | segdup | homalt | 99.9022 | 99.8883 | 99.9162 | 87.9114 | 10731 | 12 | 10731 | 9 | 9 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.0530 | 95.3668 | 98.8000 | 56.7474 | 247 | 12 | 247 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.9393 | 99.8565 | 98.0388 | 61.8965 | 8348 | 12 | 8348 | 167 | 166 | 99.4012 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0301 | 97.2414 | 98.8318 | 65.5949 | 423 | 12 | 423 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9393 | 99.8565 | 98.0388 | 61.8965 | 8348 | 12 | 8348 | 167 | 166 | 99.4012 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | het | 97.6164 | 97.5104 | 97.7226 | 86.9141 | 470 | 12 | 472 | 11 | 2 | 18.1818 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | het | 97.7646 | 97.6654 | 97.8641 | 87.4604 | 502 | 12 | 504 | 11 | 2 | 18.1818 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.8776 | 90.5512 | 97.4576 | 75.5694 | 115 | 12 | 115 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5000 | 86.0465 | 100.0000 | 77.2080 | 74 | 12 | 80 | 0 | 0 | ||
| rpoplin-dv42 | SNP | tv | map_l250_m0_e0 | homalt | 96.2766 | 93.7824 | 98.9071 | 92.7981 | 181 | 12 | 181 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.8617 | 90.9091 | 99.1736 | 77.2556 | 120 | 12 | 120 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.2646 | 97.5659 | 98.9733 | 55.4437 | 481 | 12 | 482 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 87.6250 | 95.3668 | 81.0458 | 57.1429 | 247 | 12 | 248 | 58 | 41 | 70.6897 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 93.3619 | 94.7826 | 91.9831 | 63.8720 | 218 | 12 | 218 | 19 | 12 | 63.1579 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 79.3774 | 73.9130 | 85.7143 | 59.6154 | 34 | 12 | 36 | 6 | 5 | 83.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | hetalt | 72.9211 | 61.2903 | 90.0000 | 77.2727 | 19 | 12 | 18 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | * | 96.5157 | 95.8478 | 97.1930 | 90.6741 | 277 | 12 | 277 | 8 | 3 | 37.5000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.9203 | 97.9167 | 97.9239 | 65.8796 | 564 | 12 | 566 | 12 | 9 | 75.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | * | 91.4293 | 90.6250 | 92.2481 | 89.5037 | 116 | 12 | 119 | 10 | 5 | 50.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8005 | 98.3333 | 99.2722 | 82.8678 | 708 | 12 | 682 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7441 | 99.6928 | 99.7955 | 25.9231 | 3894 | 12 | 3904 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | homalt | 99.7066 | 99.4597 | 99.9548 | 66.5911 | 2209 | 12 | 2209 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m1_e0 | hetalt | 58.0645 | 42.8571 | 90.0000 | 91.8699 | 9 | 12 | 9 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l150_m2_e0 | hetalt | 58.0645 | 42.8571 | 90.0000 | 93.2886 | 9 | 12 | 9 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.6087 | 95.3668 | 72.8614 | 66.3690 | 247 | 12 | 247 | 92 | 91 | 98.9130 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.1732 | 97.8142 | 98.5348 | 74.0741 | 537 | 12 | 538 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | I1_5 | map_l250_m0_e0 | het | 31.5789 | 20.0000 | 75.0000 | 95.5556 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 91.2206 | 93.2203 | 89.3048 | 64.9813 | 165 | 12 | 167 | 20 | 20 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 52.8416 | 65.7143 | 44.1860 | 84.1912 | 23 | 12 | 19 | 24 | 24 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m1_e0 | * | 62.3288 | 52.0000 | 77.7778 | 89.1566 | 13 | 12 | 14 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e0 | * | 62.3288 | 52.0000 | 77.7778 | 90.8629 | 13 | 12 | 14 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.1773 | 99.3135 | 93.2331 | 71.4592 | 1736 | 12 | 1736 | 126 | 98 | 77.7778 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 62.5000 | 55.5556 | 71.4286 | 97.1074 | 15 | 12 | 15 | 6 | 3 | 50.0000 | |
| mlin-fermikit | SNP | ti | map_l100_m0_e0 | hetalt | 25.0000 | 14.2857 | 100.0000 | 80.0000 | 2 | 12 | 2 | 0 | 0 | ||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 57.1429 | 53.8462 | 60.8696 | 96.6667 | 14 | 12 | 14 | 9 | 6 | 66.6667 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 48.9083 | 72.7273 | 36.8421 | 93.3913 | 32 | 12 | 42 | 72 | 2 | 2.7778 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1167 | 92.6829 | 75.3404 | 62.6343 | 152 | 12 | 498 | 163 | 50 | 30.6748 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m0_e0 | * | 83.4242 | 73.9130 | 95.7447 | 98.9135 | 34 | 12 | 45 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m1_e0 | het | 83.2909 | 81.2500 | 85.4369 | 92.7821 | 52 | 12 | 88 | 15 | 2 | 13.3333 | |
| qzeng-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 85.9418 | 83.5616 | 88.4615 | 94.3723 | 61 | 12 | 69 | 9 | 3 | 33.3333 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.5560 | 97.8984 | 93.3230 | 31.2914 | 559 | 12 | 2418 | 173 | 165 | 95.3757 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.4026 | 94.9367 | 100.0000 | 26.5823 | 225 | 12 | 290 | 0 | 0 | ||
| qzeng-custom | SNP | * | func_cds | homalt | 99.8779 | 99.8281 | 99.9278 | 20.5349 | 6967 | 12 | 6918 | 5 | 3 | 60.0000 | |
| qzeng-custom | SNP | ti | HG002complexvar | hetalt | 97.0149 | 94.2029 | 100.0000 | 39.1447 | 195 | 12 | 185 | 0 | 0 | ||
| qzeng-custom | SNP | ti | func_cds | het | 99.7296 | 99.8589 | 99.6007 | 30.7386 | 8492 | 12 | 8481 | 34 | 1 | 2.9412 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.5072 | 99.1591 | 99.8579 | 31.1980 | 1415 | 12 | 1405 | 2 | 2 | 100.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.0387 | 90.3226 | 82.1429 | 92.1875 | 112 | 12 | 115 | 25 | 5 | 20.0000 | |