PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55401-55450 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9129 | 99.8992 | 99.9266 | 60.1913 | 10900 | 11 | 10896 | 8 | 5 | 62.5000 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5093 | 99.4855 | 99.5331 | 74.9202 | 2127 | 11 | 2345 | 11 | 9 | 81.8182 | |
| astatham-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 60.7763 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8767 | 99.8193 | 99.9342 | 54.4187 | 6077 | 11 | 6077 | 4 | 4 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.9977 | 95.0226 | 99.0566 | 91.2215 | 210 | 11 | 210 | 2 | 2 | 100.0000 | |
| astatham-gatk | SNP | tv | func_cds | * | 99.8283 | 99.7483 | 99.9083 | 29.1951 | 4360 | 11 | 4359 | 4 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | func_cds | het | 99.7173 | 99.5860 | 99.8490 | 31.6916 | 2646 | 11 | 2645 | 4 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4939 | 99.2069 | 99.7825 | 64.6320 | 1376 | 11 | 1376 | 3 | 0 | 0.0000 | |
| astatham-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.6595 | 99.3775 | 99.9431 | 60.9816 | 1756 | 11 | 1756 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.5041 | 98.4993 | 96.5287 | 73.6731 | 722 | 11 | 723 | 26 | 13 | 50.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.6012 | 97.7642 | 91.6364 | 62.8378 | 481 | 11 | 504 | 46 | 23 | 50.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1091 | 95.0450 | 93.1915 | 72.5788 | 211 | 11 | 219 | 16 | 4 | 25.0000 | |
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 94.5744 | 91.1290 | 98.2906 | 87.2964 | 113 | 11 | 115 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 94.6259 | 91.2000 | 98.3193 | 88.0762 | 114 | 11 | 117 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.7939 | 98.7939 | 98.7939 | 70.6564 | 901 | 11 | 901 | 11 | 9 | 81.8182 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.6694 | 97.7688 | 99.5868 | 58.0952 | 482 | 11 | 482 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 94.1176 | 95.7529 | 92.5373 | 60.1190 | 248 | 11 | 248 | 20 | 17 | 85.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | * | 69.3878 | 60.7143 | 80.9524 | 90.2326 | 17 | 11 | 17 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 96.4696 | 97.9853 | 95.0000 | 72.7838 | 535 | 11 | 665 | 35 | 35 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 69.3912 | 74.4186 | 65.0000 | 63.6364 | 32 | 11 | 39 | 21 | 20 | 95.2381 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | homalt | 75.3723 | 82.8125 | 69.1589 | 84.6705 | 53 | 11 | 74 | 33 | 30 | 90.9091 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e0 | homalt | 74.5239 | 83.0769 | 67.5676 | 84.9389 | 54 | 11 | 75 | 36 | 33 | 91.6667 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m2_e1 | homalt | 74.3512 | 83.5821 | 66.9565 | 84.9279 | 56 | 11 | 77 | 38 | 35 | 92.1053 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 62.0690 | 45.0000 | 100.0000 | 87.0968 | 9 | 11 | 16 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l150_m2_e1 | * | 88.0187 | 87.0588 | 89.0000 | 89.9598 | 74 | 11 | 89 | 11 | 11 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | het | 90.4649 | 88.0435 | 93.0233 | 92.0149 | 81 | 11 | 80 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m1_e0 | * | 41.1429 | 26.6667 | 90.0000 | 72.2222 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e0 | * | 41.1429 | 26.6667 | 90.0000 | 76.1905 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | map_l125_m2_e1 | * | 41.1429 | 26.6667 | 90.0000 | 76.7442 | 4 | 11 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 96.3424 | 97.9964 | 94.7434 | 73.1789 | 538 | 11 | 757 | 42 | 37 | 88.0952 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e0 | het | 97.0183 | 96.4401 | 97.6035 | 87.5509 | 298 | 11 | 448 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I1_5 | map_l150_m2_e1 | het | 97.0790 | 96.5300 | 97.6344 | 87.6527 | 306 | 11 | 454 | 11 | 5 | 45.4545 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m1_e0 | het | 72.5049 | 63.3333 | 84.7826 | 81.8182 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e0 | het | 72.5049 | 63.3333 | 84.7826 | 83.2117 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | het | 86.9907 | 98.1261 | 78.1250 | 92.7637 | 576 | 11 | 575 | 161 | 28 | 17.3913 | |
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 11 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 11 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | segdup | * | 79.8443 | 81.0345 | 78.6885 | 95.9816 | 47 | 11 | 48 | 13 | 6 | 46.1538 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.6237 | 95.7364 | 99.5868 | 77.6133 | 247 | 11 | 241 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.5265 | 95.5645 | 99.5708 | 84.1389 | 237 | 11 | 232 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l125_m2_e1 | het | 72.5049 | 63.3333 | 84.7826 | 83.5125 | 19 | 11 | 39 | 7 | 5 | 71.4286 | |
| eyeh-varpipe | INDEL | I6_15 | map_siren | homalt | 86.3666 | 87.7778 | 85.0000 | 74.0821 | 79 | 11 | 102 | 18 | 17 | 94.4444 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 97.2808 | 99.7163 | 94.9614 | 65.1121 | 3867 | 11 | 3694 | 196 | 8 | 4.0816 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 46.2549 | 59.2593 | 37.9310 | 95.3895 | 16 | 11 | 11 | 18 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | homalt | 99.7129 | 99.7140 | 99.7118 | 68.3997 | 3835 | 11 | 3806 | 11 | 3 | 27.2727 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | homalt | 99.7710 | 99.7212 | 99.8208 | 74.4574 | 3935 | 11 | 3900 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | homalt | 99.7787 | 99.7306 | 99.8269 | 76.3785 | 4072 | 11 | 4037 | 7 | 3 | 42.8571 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | homalt | 99.7814 | 99.7339 | 99.8289 | 76.4129 | 4123 | 11 | 4083 | 7 | 3 | 42.8571 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | homalt | 98.6425 | 98.5788 | 98.7063 | 87.5222 | 763 | 11 | 763 | 10 | 6 | 60.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | homalt | 70.2703 | 54.1667 | 100.0000 | 92.8962 | 13 | 11 | 13 | 0 | 0 | ||