PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
55001-55050 / 86044 show all | |||||||||||||||
| cchapple-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.2224 | 98.6702 | 93.8931 | 48.2213 | 742 | 10 | 738 | 48 | 41 | 85.4167 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.4409 | 97.7011 | 99.1919 | 60.2410 | 425 | 10 | 491 | 4 | 2 | 50.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.8280 | 96.1240 | 99.5935 | 81.4199 | 248 | 10 | 245 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2009 | 99.0050 | 99.3976 | 60.0802 | 995 | 10 | 990 | 6 | 5 | 83.3333 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.8007 | 99.6434 | 96.0249 | 44.6210 | 2794 | 10 | 2778 | 115 | 115 | 100.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 83.3241 | 82.4561 | 84.2105 | 99.3544 | 47 | 10 | 48 | 9 | 1 | 11.1111 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 88.3721 | 0.0000 | 0.0000 | 76 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 83.0508 | 0.0000 | 0.0000 | 49 | 10 | 0 | 0 | 0 | ||
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.1807 | 95.9350 | 98.4592 | 79.2386 | 236 | 10 | 639 | 10 | 6 | 60.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_l125_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 92.8571 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e0 | het | 66.6667 | 50.0000 | 100.0000 | 93.4211 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l125_m2_e1 | het | 66.6667 | 50.0000 | 100.0000 | 93.5065 | 10 | 10 | 10 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | map_l150_m2_e1 | * | 59.2593 | 44.4444 | 88.8889 | 96.0352 | 8 | 10 | 8 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | map_siren | homalt | 60.7595 | 70.5882 | 53.3333 | 89.9103 | 24 | 10 | 24 | 21 | 16 | 76.1905 | |
| ciseli-custom | INDEL | D16_PLUS | segdup | het | 79.5789 | 72.9730 | 87.5000 | 90.3614 | 27 | 10 | 28 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l150_m0_e0 | het | 55.5556 | 50.0000 | 62.5000 | 96.8317 | 10 | 10 | 10 | 6 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 37.0370 | 33.3333 | 41.6667 | 99.0603 | 5 | 10 | 5 | 7 | 4 | 57.1429 | |
| ciseli-custom | INDEL | I1_5 | tech_badpromoters | * | 52.1739 | 54.5455 | 50.0000 | 52.0000 | 12 | 10 | 12 | 12 | 9 | 75.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.6942 | 99.6620 | 93.8981 | 67.0587 | 2949 | 10 | 2893 | 188 | 6 | 3.1915 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4124 | 99.3179 | 99.5070 | 45.2160 | 1456 | 10 | 1413 | 7 | 2 | 28.5714 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | * | 98.2427 | 99.2701 | 97.2364 | 94.1737 | 1360 | 10 | 1337 | 38 | 1 | 2.6316 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | het | 97.4777 | 98.9293 | 96.0680 | 94.6040 | 924 | 10 | 904 | 37 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 49.4845 | 61.5385 | 41.3793 | 93.1765 | 16 | 10 | 12 | 17 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7927 | 99.7427 | 99.8427 | 56.7264 | 3877 | 10 | 3809 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | het | 93.9083 | 99.6483 | 88.7937 | 84.1222 | 2833 | 10 | 2797 | 353 | 7 | 1.9830 | |
| gduggal-bwafb | INDEL | * | map_l125_m1_e0 | homalt | 98.7688 | 98.6339 | 98.9041 | 86.6472 | 722 | 10 | 722 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e0 | homalt | 98.8189 | 98.6894 | 98.9488 | 87.4319 | 753 | 10 | 753 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e0 | homalt | 98.1250 | 97.9210 | 98.3299 | 90.1643 | 471 | 10 | 471 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m2_e1 | homalt | 98.0671 | 97.9675 | 98.1670 | 90.1524 | 482 | 10 | 482 | 9 | 6 | 66.6667 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m1_e0 | homalt | 76.1905 | 61.5385 | 100.0000 | 90.5325 | 16 | 10 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e0 | homalt | 78.2609 | 64.2857 | 100.0000 | 90.5263 | 18 | 10 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | homalt | 79.1667 | 65.5172 | 100.0000 | 90.2564 | 19 | 10 | 19 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | map_l250_m1_e0 | * | 61.5385 | 44.4444 | 100.0000 | 99.0730 | 8 | 10 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 61.5385 | 44.4444 | 100.0000 | 77.1429 | 8 | 10 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 63.1579 | 54.5455 | 75.0000 | 88.3212 | 12 | 10 | 12 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | map_l100_m0_e0 | * | 16.6667 | 9.0909 | 100.0000 | 98.6301 | 1 | 10 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | func_cds | het | 90.7407 | 83.0508 | 100.0000 | 62.8788 | 49 | 10 | 49 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l250_m0_e0 | het | 50.0000 | 33.3333 | 100.0000 | 99.6464 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 87.6651 | 79.5918 | 97.5610 | 83.9844 | 39 | 10 | 40 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l125_m0_e0 | * | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | hetalt | 54.5455 | 37.5000 | 100.0000 | 94.8276 | 6 | 10 | 6 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l100_m0_e0 | hetalt | 54.5455 | 37.5000 | 100.0000 | 94.8276 | 6 | 10 | 6 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 82.5563 | 97.7477 | 71.4516 | 75.1004 | 434 | 10 | 443 | 177 | 113 | 63.8418 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l100_m0_e0 | * | 50.0000 | 64.2857 | 40.9091 | 94.2181 | 18 | 10 | 18 | 26 | 5 | 19.2308 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.5340 | 95.6140 | 99.5327 | 83.1893 | 218 | 10 | 213 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.6797 | 95.8678 | 99.5614 | 84.1667 | 232 | 10 | 227 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | het | 93.9882 | 98.5549 | 89.8260 | 96.1006 | 682 | 10 | 671 | 76 | 57 | 75.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m0_e0 | * | 76.2887 | 78.7234 | 74.0000 | 94.1725 | 37 | 10 | 37 | 13 | 8 | 61.5385 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 44.2791 | 62.9630 | 34.1463 | 81.0185 | 17 | 10 | 14 | 27 | 16 | 59.2593 | |
| gduggal-bwavard | INDEL | I16_PLUS | segdup | * | 77.0833 | 78.7234 | 75.5102 | 94.6389 | 37 | 10 | 37 | 12 | 6 | 50.0000 | |