PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54901-54950 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D1_5 | func_cds | homalt | 92.7536 | 86.4865 | 100.0000 | 23.8095 | 64 | 10 | 64 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | het | 94.3489 | 95.0495 | 93.6585 | 92.6126 | 192 | 10 | 192 | 13 | 5 | 38.4615 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m1_e0 | het | 92.6606 | 90.9910 | 94.3925 | 96.3680 | 101 | 10 | 101 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e0 | het | 93.2773 | 91.7355 | 94.8718 | 96.5022 | 111 | 10 | 111 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | het | 93.3333 | 91.8033 | 94.9153 | 96.5547 | 112 | 10 | 112 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.5510 | 97.9508 | 97.1545 | 69.9817 | 478 | 10 | 478 | 14 | 12 | 85.7143 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2683 | 98.7864 | 99.7549 | 68.4699 | 814 | 10 | 814 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5335 | 93.9024 | 97.2222 | 86.5672 | 154 | 10 | 105 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 90.3955 | 88.8889 | 91.9540 | 93.3231 | 80 | 10 | 80 | 7 | 2 | 28.5714 | |
| jli-custom | INDEL | D16_PLUS | map_siren | * | 94.6492 | 93.0070 | 96.3504 | 92.5503 | 133 | 10 | 132 | 5 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.1875 | 85.5072 | 100.0000 | 51.6393 | 59 | 10 | 59 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2231 | 99.8046 | 98.6484 | 46.1418 | 5107 | 10 | 5109 | 70 | 68 | 97.1429 | |
| jli-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 97.9839 | 97.9839 | 97.9839 | 87.4399 | 486 | 10 | 486 | 10 | 3 | 30.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | * | 96.9509 | 96.2121 | 97.7011 | 84.9394 | 254 | 10 | 255 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.7799 | 90.7407 | 97.0297 | 86.3881 | 98 | 10 | 98 | 3 | 0 | 0.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.8300 | 94.3820 | 99.4083 | 77.2237 | 168 | 10 | 168 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.5258 | 99.2722 | 99.7807 | 70.9677 | 1364 | 10 | 1365 | 3 | 1 | 33.3333 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.0935 | 93.2886 | 96.9697 | 75.4647 | 139 | 10 | 128 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 94.9772 | 91.2281 | 99.0476 | 84.4214 | 104 | 10 | 104 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 95.0673 | 91.3793 | 99.0654 | 85.5405 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 95.0673 | 91.3793 | 99.0654 | 85.9580 | 106 | 10 | 106 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.5527 | 99.8046 | 97.3318 | 50.7832 | 5107 | 10 | 5107 | 140 | 139 | 99.2857 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.8282 | 99.7547 | 99.9018 | 44.3519 | 4067 | 10 | 4070 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_siren | homalt | 99.3571 | 99.1438 | 99.5712 | 81.3141 | 1158 | 10 | 1161 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.3680 | 95.2153 | 97.5490 | 76.7123 | 199 | 10 | 199 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.9984 | 96.9697 | 95.0464 | 75.6777 | 320 | 10 | 307 | 16 | 12 | 75.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.1364 | 98.2877 | 100.0000 | 18.5552 | 574 | 10 | 575 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3287 | 89.4737 | 97.5309 | 91.1087 | 85 | 10 | 79 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 96.6592 | 97.9424 | 95.4092 | 91.8124 | 476 | 10 | 478 | 23 | 1 | 4.3478 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 96.5410 | 97.9879 | 95.1362 | 92.5138 | 487 | 10 | 489 | 25 | 1 | 4.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 96.5214 | 98.0315 | 95.0570 | 92.5273 | 498 | 10 | 500 | 26 | 1 | 3.8462 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8834 | 98.0237 | 95.7692 | 92.4077 | 496 | 10 | 498 | 22 | 3 | 13.6364 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.8684 | 98.0732 | 95.6929 | 93.1327 | 509 | 10 | 511 | 23 | 3 | 13.0435 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 96.8484 | 98.1168 | 95.6124 | 93.1462 | 521 | 10 | 523 | 24 | 3 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_siren | hetalt | 95.3271 | 91.0714 | 100.0000 | 86.8047 | 102 | 10 | 102 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.0711 | 93.2886 | 96.9231 | 77.9661 | 139 | 10 | 126 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | I6_15 | map_siren | het | 93.6620 | 93.0070 | 94.3262 | 88.6473 | 133 | 10 | 133 | 8 | 1 | 12.5000 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8060 | 99.8383 | 99.7738 | 56.4379 | 6174 | 10 | 6174 | 14 | 1 | 7.1429 | |
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4189 | 98.9485 | 99.8938 | 85.6381 | 941 | 10 | 941 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.8406 | 99.7106 | 99.9710 | 62.7500 | 3445 | 10 | 3445 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.0289 | 93.0070 | 99.2537 | 92.6856 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7805 | 99.6348 | 99.9267 | 31.1475 | 2728 | 10 | 2728 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | SNP | ti | func_cds | homalt | 99.9051 | 99.8104 | 100.0000 | 20.1062 | 5265 | 10 | 5265 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.8449 | 99.7933 | 99.8965 | 69.7243 | 4827 | 10 | 4827 | 5 | 3 | 60.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4495 | 99.2663 | 99.6334 | 73.6527 | 1353 | 10 | 1359 | 5 | 3 | 60.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m1_e0 | homalt | 98.7338 | 98.0695 | 99.4071 | 79.0129 | 508 | 10 | 503 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | homalt | 98.7651 | 98.1168 | 99.4220 | 80.4520 | 521 | 10 | 516 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 98.7858 | 98.1481 | 99.4318 | 80.5811 | 530 | 10 | 525 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m0_e0 | * | 94.8440 | 94.3182 | 95.3757 | 91.3802 | 166 | 10 | 165 | 8 | 2 | 25.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 83.6066 | 0.0000 | 0.0000 | 51 | 10 | 0 | 0 | 0 | ||