PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54851-54900 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e0 | het | 40.8163 | 28.5714 | 71.4286 | 92.9293 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l250_m2_e1 | het | 40.8163 | 28.5714 | 71.4286 | 93.0693 | 4 | 10 | 5 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | het | 81.2500 | 79.5918 | 82.9787 | 86.6856 | 39 | 10 | 39 | 8 | 5 | 62.5000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 32.8502 | 62.9630 | 22.2222 | 78.5714 | 17 | 10 | 2 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.4958 | 98.9669 | 98.0290 | 61.4708 | 958 | 10 | 945 | 19 | 19 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 75.0000 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 78.5714 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 70.5882 | 54.5455 | 100.0000 | 79.3103 | 12 | 10 | 12 | 0 | 0 | ||
| mlin-fermikit | INDEL | I6_15 | map_l125_m0_e0 | * | 42.8571 | 33.3333 | 60.0000 | 89.0110 | 5 | 10 | 6 | 4 | 3 | 75.0000 | |
| mlin-fermikit | SNP | * | tech_badpromoters | het | 92.4138 | 87.0130 | 98.5294 | 38.1818 | 67 | 10 | 67 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6647 | 99.7834 | 99.5462 | 33.7248 | 4606 | 10 | 4607 | 21 | 2 | 9.5238 | |
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5947 | 99.6620 | 99.5275 | 51.8290 | 2949 | 10 | 2949 | 14 | 1 | 7.1429 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.6439 | 99.6762 | 99.6117 | 68.6485 | 3078 | 10 | 3078 | 12 | 8 | 66.6667 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6524 | 99.7101 | 99.5947 | 36.6587 | 3440 | 10 | 3440 | 14 | 2 | 14.2857 | |
| jmaeng-gatk | INDEL | * | map_l125_m1_e0 | homalt | 98.9719 | 98.6339 | 99.3122 | 86.1207 | 722 | 10 | 722 | 5 | 4 | 80.0000 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e0 | homalt | 98.8838 | 98.6894 | 99.0789 | 86.9841 | 753 | 10 | 753 | 7 | 4 | 57.1429 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e1 | homalt | 98.8997 | 98.7080 | 99.0921 | 87.0551 | 764 | 10 | 764 | 7 | 4 | 57.1429 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 10 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | I6_15 | func_cds | * | 81.4815 | 76.7442 | 86.8421 | 33.3333 | 33 | 10 | 33 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | SNP | * | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 10 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 82.8282 | 98.9485 | 71.2246 | 86.5324 | 941 | 10 | 948 | 383 | 192 | 50.1305 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3156 | 99.8517 | 96.8261 | 47.4887 | 6735 | 10 | 6742 | 221 | 131 | 59.2760 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.9954 | 90.1961 | 76.8595 | 95.2900 | 92 | 10 | 93 | 28 | 3 | 10.7143 | |
| jpowers-varprowl | SNP | tv | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 10 | 0 | 0 | 0 | |||
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e0 | het | 86.2547 | 79.1667 | 94.7368 | 87.3754 | 38 | 10 | 36 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m2_e1 | het | 87.1390 | 80.3922 | 95.1220 | 86.7742 | 41 | 10 | 39 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.8593 | 98.4779 | 99.2436 | 74.6743 | 647 | 10 | 656 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 91.9372 | 86.3014 | 98.3607 | 77.2388 | 63 | 10 | 60 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 71.4894 | 58.3333 | 92.3077 | 78.3333 | 14 | 10 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 94.0476 | 88.7640 | 100.0000 | 63.5922 | 79 | 10 | 75 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.4508 | 62.9630 | 94.1176 | 80.2326 | 17 | 10 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 74.3034 | 61.5385 | 93.7500 | 78.0822 | 16 | 10 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 74.3034 | 61.5385 | 93.7500 | 81.3953 | 16 | 10 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 74.3034 | 61.5385 | 93.7500 | 81.6092 | 16 | 10 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5327 | 97.1098 | 97.9592 | 67.3333 | 336 | 10 | 336 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.8436 | 98.2270 | 99.4681 | 63.1613 | 554 | 10 | 561 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.9633 | 96.8354 | 99.1176 | 83.2016 | 306 | 10 | 337 | 3 | 3 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | het | 95.3087 | 93.0070 | 97.7273 | 76.9231 | 133 | 10 | 129 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8619 | 99.7492 | 99.9748 | 32.5060 | 3977 | 10 | 3969 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0040 | 98.0276 | 100.0000 | 80.7123 | 497 | 10 | 482 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6813 | 99.7101 | 99.6525 | 34.1910 | 3440 | 10 | 3441 | 12 | 3 | 25.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m1_e0 | homalt | 99.8478 | 99.7466 | 99.9492 | 70.2200 | 3936 | 10 | 3937 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_l150_m2_e0 | homalt | 99.8529 | 99.7551 | 99.9509 | 72.6094 | 4073 | 10 | 4074 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 95.8333 | 92.0000 | 100.0000 | 35.1955 | 115 | 10 | 116 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e0 | homalt | 98.7417 | 97.9210 | 99.5763 | 84.9490 | 471 | 10 | 470 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e1 | homalt | 98.7709 | 97.9675 | 99.5876 | 84.9098 | 482 | 10 | 483 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | SNP | ti | map_siren | hetalt | 88.6792 | 82.4561 | 95.9184 | 81.0078 | 47 | 10 | 47 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 35.2941 | 23.0769 | 75.0000 | 69.2308 | 3 | 10 | 3 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l100_m2_e0 | het | 70.3704 | 79.1667 | 63.3333 | 95.2978 | 38 | 10 | 38 | 22 | 19 | 86.3636 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_siren | het | 72.9591 | 87.1795 | 62.7273 | 93.3775 | 68 | 10 | 69 | 41 | 36 | 87.8049 | |