PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54651-54700 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | * | 95.1111 | 92.2414 | 98.1651 | 85.7516 | 107 | 9 | 107 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | * | 94.6903 | 92.2414 | 97.2727 | 85.9335 | 107 | 9 | 107 | 3 | 2 | 66.6667 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7332 | 99.6004 | 99.8664 | 53.4604 | 2243 | 9 | 2243 | 3 | 1 | 33.3333 | |
| egarrison-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.2374 | 91.8182 | 92.6606 | 88.8205 | 101 | 9 | 101 | 8 | 8 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.7143 | 78.5714 | 94.2857 | 95.4368 | 33 | 9 | 33 | 2 | 2 | 100.0000 | |
| egarrison-hhga | SNP | tv | map_l150_m0_e0 | homalt | 99.6224 | 99.3223 | 99.9242 | 75.6143 | 1319 | 9 | 1319 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 62.3549 | 57.1429 | 68.6131 | 99.8675 | 12 | 9 | 94 | 43 | 39 | 90.6977 | |
| eyeh-varpipe | INDEL | * | map_l150_m1_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 95.1342 | 12 | 9 | 29 | 0 | 0 | ||
| eyeh-varpipe | INDEL | * | map_l150_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 95.4210 | 12 | 9 | 31 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4132 | 89.6552 | 97.5000 | 85.2399 | 78 | 9 | 78 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.3969 | 337 | 9 | 337 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.3979 | 97.1519 | 99.6764 | 72.8471 | 307 | 9 | 308 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 98.4186 | 98.2213 | 98.6166 | 89.9303 | 497 | 9 | 499 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 98.4582 | 98.2659 | 98.6513 | 90.9250 | 510 | 9 | 512 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4930 | 98.3051 | 98.6817 | 90.9679 | 522 | 9 | 524 | 7 | 2 | 28.5714 | |
| dgrover-gatk | INDEL | I6_15 | * | homalt | 97.7715 | 99.8557 | 95.7725 | 55.4177 | 6230 | 9 | 6230 | 275 | 272 | 98.9091 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.5364 | 98.1557 | 98.9201 | 82.7174 | 479 | 9 | 458 | 5 | 1 | 20.0000 | |
| dgrover-gatk | SNP | * | HG002compoundhet | homalt | 99.8980 | 99.9165 | 99.8794 | 34.8304 | 10773 | 9 | 10768 | 13 | 12 | 92.3077 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7174 | 99.8545 | 99.5807 | 55.4302 | 6175 | 9 | 6175 | 26 | 1 | 3.8462 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.3490 | 99.4898 | 99.2086 | 89.1572 | 1755 | 9 | 1755 | 14 | 13 | 92.8571 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 91.0891 | 96.8421 | 93.6242 | 92 | 9 | 92 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | ti | map_l250_m0_e0 | homalt | 98.7283 | 97.9358 | 99.5338 | 91.1982 | 427 | 9 | 427 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5499 | 99.3263 | 99.7744 | 49.3526 | 1327 | 9 | 1327 | 3 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2958 | 98.9474 | 99.6466 | 51.0098 | 846 | 9 | 846 | 3 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9073 | 99.8718 | 99.9429 | 60.7832 | 7010 | 9 | 7006 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | * | map_l125_m1_e0 | homalt | 98.9056 | 98.7705 | 99.0411 | 85.3443 | 723 | 9 | 723 | 7 | 4 | 57.1429 | |
| egarrison-hhga | INDEL | * | map_l125_m2_e1 | hetalt | 87.0715 | 79.0698 | 96.8750 | 94.1392 | 34 | 9 | 31 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m1_e0 | het | 95.5145 | 95.2632 | 95.7672 | 95.8815 | 181 | 9 | 181 | 8 | 2 | 25.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | het | 95.9427 | 95.7143 | 96.1722 | 95.9846 | 201 | 9 | 201 | 8 | 2 | 25.0000 | |
| ckim-isaac | INDEL | D16_PLUS | segdup | * | 86.7257 | 84.4828 | 89.0909 | 92.1090 | 49 | 9 | 49 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m0_e0 | homalt | 47.0588 | 30.7692 | 100.0000 | 97.2028 | 4 | 9 | 4 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.3906 | 75.6757 | 92.8571 | 77.4194 | 28 | 9 | 39 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.8571 | 87.8378 | 98.4848 | 78.0000 | 65 | 9 | 65 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | map_l125_m1_e0 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l125_m2_e0 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I16_PLUS | map_l125_m2_e1 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 75.6757 | 60.8696 | 100.0000 | 20.0000 | 14 | 9 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | * | 76.9231 | 62.5000 | 100.0000 | 98.4600 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1793 | 97.2561 | 99.1202 | 37.6600 | 319 | 9 | 338 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.2867 | 99.8758 | 98.7045 | 36.9692 | 7238 | 9 | 7238 | 95 | 94 | 98.9474 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.7615 | 97.6623 | 97.8610 | 79.2798 | 376 | 9 | 366 | 8 | 7 | 87.5000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7372 | 99.6061 | 99.8685 | 48.0892 | 2276 | 9 | 2279 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 90.3226 | 82.3529 | 100.0000 | 91.7939 | 42 | 9 | 43 | 0 | 0 | ||
| ckim-vqsr | INDEL | D1_5 | segdup | * | 99.1399 | 99.1840 | 99.0958 | 96.1257 | 1094 | 9 | 1096 | 10 | 2 | 20.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.8838 | 90.5263 | 97.5000 | 91.3886 | 86 | 9 | 78 | 2 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.7431 | 84.7458 | 100.0000 | 72.2222 | 50 | 9 | 55 | 0 | 0 | ||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9997 | 91.5094 | 96.6292 | 86.9883 | 97 | 9 | 86 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.3607 | 94.8571 | 100.0000 | 65.1452 | 166 | 9 | 168 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.8140 | 91.9643 | 100.0000 | 71.9346 | 103 | 9 | 103 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.2766 | 99.2360 | 97.3356 | 73.4116 | 1169 | 9 | 1169 | 32 | 32 | 100.0000 | |