PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54551-54600 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 18.1818 | 0.0000 | 0.0000 | 2 | 9 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D16_PLUS | map_l150_m2_e1 | * | 64.2857 | 50.0000 | 90.0000 | 94.5946 | 9 | 9 | 9 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| anovak-vg | INDEL | D6_15 | segdup | homalt | 85.5227 | 82.0000 | 89.3617 | 91.4234 | 41 | 9 | 42 | 5 | 3 | 60.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | * | 23.5294 | 18.1818 | 33.3333 | 68.4211 | 2 | 9 | 2 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m1_e0 | * | 25.0000 | 18.1818 | 40.0000 | 78.2609 | 2 | 9 | 2 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e0 | * | 23.5294 | 18.1818 | 33.3333 | 81.8182 | 2 | 9 | 2 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m2_e1 | * | 23.5294 | 18.1818 | 33.3333 | 81.8182 | 2 | 9 | 2 | 4 | 3 | 75.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.8462 | 99.3358 | 96.4006 | 82.8203 | 1346 | 9 | 1232 | 46 | 29 | 63.0435 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 94.6615 | 98.9726 | 90.7104 | 82.2631 | 867 | 9 | 664 | 68 | 63 | 92.6471 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.3401 | 90.7216 | 88.0000 | 95.2584 | 88 | 9 | 88 | 12 | 4 | 33.3333 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.3003 | 99.8758 | 98.7314 | 36.7417 | 7238 | 9 | 7238 | 93 | 92 | 98.9247 | |
| astatham-gatk | INDEL | D1_5 | segdup | * | 99.2297 | 99.1840 | 99.2754 | 94.8823 | 1094 | 9 | 1096 | 8 | 2 | 25.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.4132 | 89.6552 | 97.5000 | 85.0187 | 78 | 9 | 78 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9997 | 91.5094 | 96.6292 | 86.9310 | 97 | 9 | 86 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 95.4274 | 94.3750 | 96.5035 | 89.8148 | 151 | 9 | 138 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3176 | 99.3243 | 99.3109 | 72.4414 | 1323 | 9 | 1297 | 9 | 7 | 77.7778 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.1528 | 99.2360 | 97.0930 | 73.2444 | 1169 | 9 | 1169 | 35 | 35 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.3979 | 97.1519 | 99.6764 | 72.8471 | 307 | 9 | 308 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 97.5720 | 97.0968 | 98.0519 | 89.3683 | 301 | 9 | 302 | 6 | 2 | 33.3333 | |
| astatham-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 96.8296 | 95.3125 | 98.3957 | 90.5793 | 183 | 9 | 184 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I6_15 | * | homalt | 97.7332 | 99.8557 | 95.6989 | 54.9107 | 6230 | 9 | 6230 | 280 | 278 | 99.2857 | |
| astatham-gatk | SNP | ti | HG002compoundhet | homalt | 99.8918 | 99.8783 | 99.9053 | 30.4740 | 7385 | 9 | 7385 | 7 | 7 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7327 | 99.4668 | 100.0000 | 64.1699 | 1679 | 9 | 1679 | 0 | 0 | ||
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 91.0891 | 96.8421 | 93.5462 | 92 | 9 | 92 | 3 | 3 | 100.0000 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5825 | 99.3750 | 99.7908 | 68.8193 | 1431 | 9 | 1431 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.3720 | 99.3348 | 99.4092 | 74.3463 | 1344 | 9 | 1346 | 8 | 3 | 37.5000 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2731 | 99.5818 | 98.9663 | 47.1998 | 2143 | 9 | 2202 | 23 | 5 | 21.7391 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.9134 | 86.7647 | 100.0000 | 97.2936 | 59 | 9 | 59 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | segdup | homalt | 59.8909 | 80.8511 | 47.5610 | 87.6506 | 38 | 9 | 39 | 43 | 42 | 97.6744 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 3 | 9 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 25.0000 | 0.0000 | 0.0000 | 3 | 9 | 0 | 0 | 0 | ||
| anovak-vg | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 35.7143 | 0.0000 | 0.0000 | 5 | 9 | 0 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 62.6217 | 78.5714 | 52.0548 | 84.3011 | 33 | 9 | 38 | 35 | 10 | 28.5714 | |
| anovak-vg | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 58.3587 | 75.0000 | 47.7612 | 82.0856 | 27 | 9 | 32 | 35 | 10 | 28.5714 | |
| astatham-gatk | INDEL | * | map_l250_m2_e0 | het | 93.9252 | 95.7143 | 92.2018 | 96.5943 | 201 | 9 | 201 | 17 | 2 | 11.7647 | |
| astatham-gatk | INDEL | * | map_l250_m2_e1 | het | 93.9535 | 95.7346 | 92.2374 | 96.6702 | 202 | 9 | 202 | 17 | 2 | 11.7647 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.0233 | 86.9565 | 100.0000 | 58.0420 | 60 | 9 | 60 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6717 | 99.6061 | 99.7373 | 45.9408 | 2276 | 9 | 2278 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | segdup | * | 99.4999 | 99.1840 | 99.8179 | 94.3988 | 1094 | 9 | 1096 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 92.9134 | 86.7647 | 100.0000 | 72.5581 | 59 | 9 | 59 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 92.9134 | 86.7647 | 100.0000 | 73.6607 | 59 | 9 | 59 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | segdup | * | 96.2963 | 95.2880 | 97.3262 | 92.9726 | 182 | 9 | 182 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.0041 | 92.6230 | 93.3884 | 80.4207 | 113 | 9 | 113 | 8 | 8 | 100.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.6522 | 91.6667 | 100.0000 | 74.7423 | 99 | 9 | 98 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 75.6757 | 60.8696 | 100.0000 | 75.8621 | 14 | 9 | 14 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.0495 | 94.1176 | 96.0000 | 76.9231 | 144 | 9 | 144 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.3740 | 94.1935 | 98.6577 | 81.7625 | 146 | 9 | 147 | 2 | 1 | 50.0000 | |