PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54401-54450 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8841 | 99.7685 | 100.0000 | 57.9364 | 3878 | 9 | 3877 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6381 | 99.7391 | 99.5373 | 34.1584 | 3441 | 9 | 3442 | 16 | 3 | 18.7500 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | homalt | 99.6224 | 99.3223 | 99.9242 | 72.7891 | 1319 | 9 | 1319 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 91.0757 | 96.0870 | 86.5613 | 76.5524 | 221 | 9 | 219 | 34 | 27 | 79.4118 | |
| mlin-fermikit | INDEL | D16_PLUS | map_l100_m0_e0 | het | 52.5060 | 52.6316 | 52.3810 | 94.1176 | 10 | 9 | 11 | 10 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.9442 | 87.3239 | 49.2063 | 47.2803 | 62 | 9 | 62 | 64 | 64 | 100.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 26.6667 | 47.0588 | 18.6047 | 97.2132 | 8 | 9 | 8 | 35 | 1 | 2.8571 | |
| gduggal-snapvard | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | het | 88.0637 | 97.3607 | 80.3874 | 95.1486 | 332 | 9 | 332 | 81 | 18 | 22.2222 | |
| ghariani-varprowl | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | * | map_l250_m1_e0 | homalt | 93.4579 | 91.7431 | 95.2381 | 94.3760 | 100 | 9 | 100 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e0 | homalt | 93.8053 | 92.1739 | 95.4955 | 94.7243 | 106 | 9 | 106 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | * | map_l250_m2_e1 | homalt | 93.8596 | 92.2414 | 95.5357 | 94.7955 | 107 | 9 | 107 | 5 | 2 | 40.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D1_5 | map_l100_m0_e0 | het | 89.8148 | 98.4772 | 82.5532 | 89.6186 | 582 | 9 | 582 | 123 | 22 | 17.8862 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | het | 90.8745 | 98.7603 | 84.1549 | 90.4911 | 717 | 9 | 717 | 135 | 26 | 19.2593 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | het | 91.1836 | 98.8220 | 84.6413 | 91.0008 | 755 | 9 | 755 | 137 | 26 | 18.9781 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e1 | het | 91.0832 | 98.8312 | 84.4617 | 91.0642 | 761 | 9 | 761 | 140 | 27 | 19.2857 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 77.0340 | 78.5714 | 75.5556 | 99.4804 | 33 | 9 | 34 | 11 | 6 | 54.5455 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 57.1429 | 66.6667 | 50.0000 | 84.9206 | 18 | 9 | 19 | 19 | 18 | 94.7368 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l125_m1_e0 | het | 94.1757 | 98.1481 | 90.5123 | 91.5531 | 477 | 9 | 477 | 50 | 17 | 34.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e0 | het | 94.0270 | 98.1891 | 90.2033 | 92.2978 | 488 | 9 | 488 | 53 | 18 | 33.9623 | |
| ghariani-varprowl | INDEL | I1_5 | map_l125_m2_e1 | het | 94.0622 | 98.2283 | 90.2351 | 92.3365 | 499 | 9 | 499 | 54 | 18 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 79.1667 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 81.3433 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 81.4815 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.6830 | 99.7395 | 90.1145 | 68.5511 | 3446 | 9 | 3464 | 380 | 233 | 61.3158 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | func_cds | het | 99.5080 | 99.8942 | 99.1249 | 31.7349 | 8495 | 9 | 8495 | 75 | 2 | 2.6667 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.4729 | 99.6276 | 91.6509 | 80.5506 | 2408 | 9 | 2415 | 220 | 130 | 59.0909 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.6127 | 99.7743 | 97.4780 | 44.0701 | 3978 | 9 | 3981 | 103 | 61 | 59.2233 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 71.3785 | 86.3636 | 60.8247 | 96.1886 | 57 | 9 | 59 | 38 | 3 | 7.8947 | |
| ghariani-varprowl | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.9071 | 98.7722 | 99.0424 | 71.9709 | 724 | 9 | 724 | 7 | 5 | 71.4286 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | het | 84.3060 | 98.2490 | 73.8286 | 91.1437 | 505 | 9 | 646 | 229 | 52 | 22.7074 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | het | 79.3681 | 85.0000 | 74.4361 | 85.1064 | 51 | 9 | 99 | 34 | 20 | 58.8235 | |
| gduggal-snapvard | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 52.6316 | 0.0000 | 0.0000 | 10 | 9 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 0.0000 | 55.0000 | 0.0000 | 0.0000 | 11 | 9 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e0 | * | 57.8534 | 59.0909 | 56.6667 | 94.8980 | 13 | 9 | 17 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m2_e1 | * | 58.5732 | 59.0909 | 58.0645 | 94.8845 | 13 | 9 | 18 | 13 | 7 | 53.8462 | |
| gduggal-snapvard | INDEL | D6_15 | tech_badpromoters | * | 50.2242 | 47.0588 | 53.8462 | 60.6061 | 8 | 9 | 7 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I16_PLUS | func_cds | het | 0.0000 | 0.0000 | 60.0000 | 58.3333 | 0 | 9 | 3 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m0_e0 | * | 29.6296 | 18.1818 | 80.0000 | 78.5714 | 2 | 9 | 12 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l150_m1_e0 | * | 30.1075 | 18.1818 | 87.5000 | 86.8852 | 2 | 9 | 7 | 1 | 1 | 100.0000 | |