PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54251-54300 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4006 | 98.3051 | 98.4962 | 88.9741 | 522 | 9 | 524 | 8 | 2 | 25.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e1 | het | 97.7828 | 97.1609 | 98.4127 | 89.5937 | 308 | 9 | 310 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | segdup | * | 99.4321 | 99.1501 | 99.7156 | 94.0254 | 1050 | 9 | 1052 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4690 | 98.9437 | 100.0000 | 83.2738 | 843 | 9 | 843 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.5902 | 99.2647 | 99.9178 | 64.5481 | 1215 | 9 | 1215 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | map_l150_m0_e0 | homalt | 99.6199 | 99.6740 | 99.5658 | 75.7331 | 2752 | 9 | 2752 | 12 | 4 | 33.3333 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.1045 | 98.2249 | 100.0000 | 84.7380 | 498 | 9 | 498 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6987 | 99.3992 | 100.0000 | 81.4570 | 1489 | 9 | 1489 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | * | segdup | hetalt | 96.4143 | 93.0769 | 100.0000 | 94.8341 | 121 | 9 | 123 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.6255 | 94.6746 | 64.3564 | 81.0507 | 160 | 9 | 65 | 36 | 36 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | * | 92.3827 | 93.7063 | 91.0959 | 92.6633 | 134 | 9 | 133 | 13 | 1 | 7.6923 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5749 | 99.1533 | 100.0000 | 79.4702 | 1054 | 9 | 1054 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.7337 | 96.8858 | 98.5965 | 88.2183 | 280 | 9 | 281 | 4 | 1 | 25.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.0060 | 94.7368 | 99.3865 | 93.6477 | 162 | 9 | 162 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | * | 97.2222 | 95.1087 | 99.4318 | 94.0999 | 175 | 9 | 175 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e1 | * | 97.2376 | 95.1351 | 99.4350 | 94.2157 | 176 | 9 | 176 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.4785 | 89.5349 | 100.0000 | 77.9841 | 77 | 9 | 83 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 91.7431 | 84.7458 | 100.0000 | 74.1463 | 50 | 9 | 53 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.4276 | 94.3750 | 98.5714 | 88.7910 | 151 | 9 | 138 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.0084 | 95.5224 | 94.5000 | 87.3578 | 192 | 9 | 189 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4111 | 97.9730 | 98.8532 | 73.6237 | 435 | 9 | 431 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.3834 | 97.9310 | 98.8399 | 66.3544 | 426 | 9 | 426 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3103 | 98.6301 | 100.0000 | 78.6632 | 648 | 9 | 648 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.8930 | 97.8102 | 100.0000 | 71.3267 | 402 | 9 | 402 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.2235 | 98.4589 | 100.0000 | 19.2146 | 575 | 9 | 576 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 93.4307 | 87.6712 | 100.0000 | 75.2896 | 64 | 9 | 64 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.4785 | 89.5349 | 100.0000 | 78.2152 | 77 | 9 | 83 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.7657 | 94.3750 | 99.2806 | 89.2830 | 151 | 9 | 138 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5485 | 99.7455 | 99.3523 | 71.7771 | 3528 | 9 | 3528 | 23 | 22 | 95.6522 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5588 | 99.3397 | 99.7789 | 76.7478 | 1354 | 9 | 1354 | 3 | 1 | 33.3333 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.0092 | 98.6133 | 97.4125 | 67.2319 | 640 | 9 | 640 | 17 | 17 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.9273 | 98.0851 | 99.7840 | 68.0469 | 461 | 9 | 462 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m1_e0 | * | 98.7982 | 98.9157 | 98.6811 | 85.9241 | 821 | 9 | 823 | 11 | 2 | 18.1818 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m1_e0 | het | 98.2526 | 98.1481 | 98.3573 | 87.3539 | 477 | 9 | 479 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | * | 98.8360 | 98.9498 | 98.7224 | 87.0837 | 848 | 9 | 850 | 11 | 2 | 18.1818 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e0 | het | 98.2912 | 98.1891 | 98.3936 | 88.4562 | 488 | 9 | 490 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | * | 98.8533 | 98.9655 | 98.7414 | 87.2204 | 861 | 9 | 863 | 11 | 2 | 18.1818 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l125_m2_e1 | het | 98.3282 | 98.2283 | 98.4283 | 88.5257 | 499 | 9 | 501 | 8 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | map_l250_m1_e0 | homalt | 99.4730 | 99.6346 | 99.3120 | 87.0152 | 2454 | 9 | 2454 | 17 | 6 | 35.2941 | |
| hfeng-pmm2 | SNP | ti | map_l150_m0_e0 | homalt | 99.6019 | 99.6740 | 99.5298 | 75.8368 | 2752 | 9 | 2752 | 13 | 5 | 38.4615 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.2727 | 65.3846 | 94.4444 | 96.9072 | 17 | 9 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5101 | 99.0249 | 100.0000 | 30.0763 | 914 | 9 | 916 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2656 | 92.8000 | 100.0000 | 29.5181 | 116 | 9 | 117 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l100_m1_e0 | homalt | 99.2665 | 99.2665 | 99.2665 | 80.9205 | 1218 | 9 | 1218 | 9 | 4 | 44.4444 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e0 | homalt | 99.2469 | 99.2863 | 99.2076 | 82.1525 | 1252 | 9 | 1252 | 10 | 4 | 40.0000 | |
| hfeng-pmm3 | INDEL | * | map_l100_m2_e1 | homalt | 99.2587 | 99.2974 | 99.2200 | 82.2364 | 1272 | 9 | 1272 | 10 | 4 | 40.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.1927 | 82.3529 | 88.2353 | 94.1379 | 42 | 9 | 30 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | * | 98.5264 | 98.3425 | 98.7109 | 83.7230 | 534 | 9 | 536 | 7 | 3 | 42.8571 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | het | 98.2965 | 97.2393 | 99.3769 | 85.1320 | 317 | 9 | 319 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l125_m1_e0 | * | 89.7959 | 83.0189 | 97.7778 | 90.5263 | 44 | 9 | 44 | 1 | 1 | 100.0000 | |