PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
54001-54050 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.4490 | 98.2824 | 80.4044 | 77.2309 | 515 | 9 | 517 | 126 | 19 | 15.0794 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.2454 | 92.7419 | 95.7983 | 99.9211 | 115 | 9 | 114 | 5 | 3 | 60.0000 | |
| ckim-dragen | INDEL | * | map_l150_m1_e0 | homalt | 98.4759 | 98.0519 | 98.9035 | 88.0940 | 453 | 9 | 451 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | * | map_l150_m2_e0 | homalt | 98.5364 | 98.1289 | 98.9474 | 89.1453 | 472 | 9 | 470 | 5 | 4 | 80.0000 | |
| ckim-dragen | INDEL | * | map_l150_m2_e1 | homalt | 98.3678 | 98.1707 | 98.5656 | 89.0998 | 483 | 9 | 481 | 7 | 5 | 71.4286 | |
| ckim-dragen | INDEL | * | segdup | het | 95.8400 | 99.3861 | 92.5383 | 95.9567 | 1457 | 9 | 1451 | 117 | 2 | 1.7094 | |
| ckim-dragen | INDEL | D16_PLUS | * | homalt | 97.0588 | 99.4681 | 94.7635 | 72.2066 | 1683 | 9 | 1683 | 93 | 84 | 90.3226 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.0496 | 99.2794 | 93.0233 | 76.1666 | 1240 | 9 | 1240 | 93 | 84 | 90.3226 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.7834 | 99.1728 | 92.6180 | 69.4386 | 1079 | 9 | 1079 | 86 | 79 | 91.8605 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 96.0496 | 99.2794 | 93.0233 | 76.1666 | 1240 | 9 | 1240 | 93 | 84 | 90.3226 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.6628 | 98.4043 | 98.9228 | 61.2656 | 555 | 9 | 551 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | segdup | * | 99.3368 | 99.1501 | 99.5243 | 94.3140 | 1050 | 9 | 1046 | 5 | 3 | 60.0000 | |
| cchapple-custom | INDEL | I6_15 | HG002complexvar | homalt | 98.1176 | 99.2586 | 97.0025 | 48.4991 | 1205 | 9 | 1165 | 36 | 35 | 97.2222 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.5758 | 97.4576 | 99.7199 | 68.4629 | 345 | 9 | 356 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | * | 92.7767 | 92.1053 | 93.4579 | 87.1239 | 105 | 9 | 100 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | * | 92.9049 | 92.2414 | 93.5780 | 88.1907 | 107 | 9 | 102 | 7 | 2 | 28.5714 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | * | 92.9336 | 92.2414 | 93.6364 | 88.3103 | 107 | 9 | 103 | 7 | 2 | 28.5714 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.6741 | 99.7905 | 99.5579 | 54.7054 | 4286 | 9 | 4279 | 19 | 1 | 5.2632 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.6154 | 78.5714 | 91.6667 | 96.0656 | 33 | 9 | 33 | 3 | 0 | 0.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7161 | 99.4907 | 99.9426 | 43.6105 | 1758 | 9 | 1742 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.1683 | 75.0000 | 93.3333 | 87.0690 | 27 | 9 | 28 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | homalt | 94.3396 | 91.7431 | 97.0874 | 92.8073 | 100 | 9 | 100 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | homalt | 94.6429 | 92.1739 | 97.2477 | 93.3211 | 106 | 9 | 106 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | homalt | 94.6903 | 92.2414 | 97.2727 | 93.4368 | 107 | 9 | 107 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 67.7108 | 95.5224 | 52.4422 | 85.5605 | 192 | 9 | 204 | 185 | 99 | 53.5135 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 44.4444 | 30.7692 | 80.0000 | 37.5000 | 4 | 9 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | het | 65.0768 | 88.4615 | 51.4706 | 92.9130 | 69 | 9 | 70 | 66 | 34 | 51.5152 | |
| gduggal-bwavard | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | het | 89.9509 | 98.4772 | 82.7834 | 89.5125 | 582 | 9 | 577 | 120 | 17 | 14.1667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | het | 91.3057 | 98.8220 | 84.8519 | 90.7276 | 755 | 9 | 745 | 133 | 17 | 12.7820 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | het | 91.2581 | 98.8312 | 84.7630 | 90.8034 | 761 | 9 | 751 | 135 | 18 | 13.3333 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | * | 87.6716 | 96.8858 | 80.0578 | 92.5399 | 280 | 9 | 277 | 69 | 7 | 10.1449 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m1_e0 | * | 69.3878 | 65.3846 | 73.9130 | 90.4167 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e0 | * | 69.3878 | 65.3846 | 73.9130 | 91.8149 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m2_e1 | * | 69.3878 | 65.3846 | 73.9130 | 91.9861 | 17 | 9 | 17 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l125_m1_e0 | het | 94.3995 | 98.1481 | 90.9266 | 90.6464 | 477 | 9 | 471 | 47 | 19 | 40.4255 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e0 | het | 94.2428 | 98.1891 | 90.6015 | 91.4662 | 488 | 9 | 482 | 50 | 22 | 44.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m2_e1 | het | 94.3638 | 98.2283 | 90.7919 | 91.5103 | 499 | 9 | 493 | 50 | 22 | 44.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m1_e0 | homalt | 96.9151 | 95.4545 | 98.4211 | 81.2808 | 189 | 9 | 187 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l150_m2_e0 | homalt | 96.9620 | 95.5224 | 98.4456 | 83.3045 | 192 | 9 | 190 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 73.1183 | 24 | 9 | 24 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 76.8519 | 24 | 9 | 24 | 1 | 0 | 0.0000 | |