PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53351-53400 / 86044 show all | |||||||||||||||
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 99.1765 | 99.0599 | 99.2933 | 88.5872 | 843 | 8 | 843 | 6 | 4 | 66.6667 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4555 | 99.2754 | 99.6364 | 86.7438 | 1096 | 8 | 1096 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8342 | 99.6690 | 100.0000 | 72.9599 | 2409 | 8 | 2409 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7576 | 99.6772 | 99.8383 | 36.6060 | 2470 | 8 | 2469 | 4 | 0 | 0.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | hetalt | 82.3529 | 72.4138 | 95.4545 | 87.4286 | 21 | 8 | 21 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e0 | hetalt | 83.0189 | 73.3333 | 95.6522 | 88.2653 | 22 | 8 | 22 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l100_m2_e1 | hetalt | 83.6364 | 74.1935 | 95.8333 | 87.8173 | 23 | 8 | 23 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | SNP | ti | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.4058 | 16 | 8 | 16 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4192 | 16 | 8 | 16 | 0 | 0 | ||
| jmaeng-gatk | SNP | ti | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 90.4192 | 16 | 8 | 16 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | map_l250_m0_e0 | * | 93.3679 | 89.7436 | 97.2973 | 95.8843 | 70 | 8 | 72 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m0_e0 | het | 90.0391 | 84.9057 | 95.8333 | 93.7173 | 45 | 8 | 46 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.9286 | 92.1569 | 97.8723 | 55.6604 | 94 | 8 | 92 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | het | 88.1963 | 82.6087 | 94.5946 | 86.1423 | 38 | 8 | 35 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.3103 | 98.6301 | 100.0000 | 25.8312 | 576 | 8 | 580 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 92.9853 | 88.2353 | 98.2759 | 77.0751 | 60 | 8 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 92.9853 | 88.2353 | 98.2759 | 77.6062 | 60 | 8 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.4155 | 93.4426 | 93.3884 | 74.3100 | 114 | 8 | 113 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 85.7143 | 77.1429 | 96.4286 | 65.8537 | 27 | 8 | 27 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 90.6977 | 82.9787 | 100.0000 | 65.2174 | 39 | 8 | 40 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 78.9474 | 65.2174 | 100.0000 | 80.0000 | 15 | 8 | 16 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.5672 | 78.3784 | 96.6667 | 70.5882 | 29 | 8 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0917 | 98.9651 | 99.2188 | 73.5537 | 765 | 8 | 762 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3191 | 99.1623 | 99.4764 | 77.1586 | 947 | 8 | 950 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2265 | 98.7673 | 99.6899 | 57.2281 | 641 | 8 | 643 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.6087 | 70.3704 | 100.0000 | 76.4045 | 19 | 8 | 21 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | het | 81.8658 | 97.6812 | 70.4581 | 90.5282 | 337 | 8 | 446 | 187 | 38 | 20.3209 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | homalt | 94.6075 | 90.5882 | 99.0000 | 88.8143 | 77 | 8 | 99 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | het | 83.7248 | 98.3402 | 72.8916 | 90.7572 | 474 | 8 | 605 | 225 | 50 | 22.2222 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | het | 77.8579 | 87.5000 | 70.1299 | 85.8326 | 56 | 8 | 108 | 46 | 30 | 65.2174 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 0.0000 | 57.8947 | 0.0000 | 0.0000 | 11 | 8 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | het | 77.5447 | 88.7324 | 68.8623 | 85.9428 | 63 | 8 | 115 | 52 | 35 | 67.3077 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 0.0000 | 57.8947 | 0.0000 | 0.0000 | 11 | 8 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | het | 77.2841 | 88.7324 | 68.4524 | 86.1272 | 63 | 8 | 115 | 53 | 35 | 66.0377 | |
| gduggal-snapvard | INDEL | D6_15 | map_l250_m1_e0 | * | 56.9106 | 55.5556 | 58.3333 | 95.4631 | 10 | 8 | 14 | 10 | 5 | 50.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | func_cds | homalt | 96.1113 | 93.2773 | 99.1228 | 19.1489 | 111 | 8 | 113 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 49.3293 | 70.3704 | 37.9747 | 63.2558 | 19 | 8 | 30 | 49 | 32 | 65.3061 | |
| gduggal-snapvard | INDEL | I1_5 | map_l150_m0_e0 | homalt | 92.3139 | 88.0597 | 97.0000 | 87.0634 | 59 | 8 | 97 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | * | 83.3611 | 92.4528 | 75.8974 | 95.7498 | 98 | 8 | 148 | 47 | 13 | 27.6596 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e0 | * | 84.1683 | 92.9204 | 76.9231 | 95.9931 | 105 | 8 | 160 | 48 | 13 | 27.0833 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | * | 84.2599 | 92.9825 | 77.0335 | 96.0759 | 106 | 8 | 161 | 48 | 13 | 27.0833 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 63.6275 | 87.0968 | 50.1217 | 72.1733 | 54 | 8 | 206 | 205 | 170 | 82.9268 | |
| gduggal-snapvard | SNP | ti | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | tech_badpromoters | homalt | 89.1892 | 80.4878 | 100.0000 | 42.1053 | 33 | 8 | 33 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.1837 | 80.4878 | 88.2353 | 95.6907 | 33 | 8 | 30 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||