PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53201-53250 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | * | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.6842 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | * | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.7173 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.3920 | 94.7368 | 77.7251 | 93.0040 | 144 | 8 | 164 | 47 | 4 | 8.5106 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7726 | 99.6365 | 99.9090 | 41.7859 | 2193 | 8 | 2195 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | ti | map_l125_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.5000 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | ti | map_l125_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 88.8889 | 16 | 8 | 16 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.6829 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.6842 | 12 | 8 | 12 | 0 | 0 | ||
| qzeng-custom | SNP | tv | map_l150_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 93.7173 | 12 | 8 | 12 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | homalt | 98.6220 | 98.4283 | 98.8166 | 82.4931 | 501 | 8 | 501 | 6 | 3 | 50.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 65.8913 | 84.0000 | 54.2056 | 64.5695 | 42 | 8 | 58 | 49 | 46 | 93.8776 | |
| ndellapenna-hhga | INDEL | * | map_l100_m0_e0 | hetalt | 81.2065 | 75.7576 | 87.5000 | 92.6380 | 25 | 8 | 21 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m1_e0 | hetalt | 88.8889 | 80.0000 | 100.0000 | 94.2797 | 32 | 8 | 27 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | hetalt | 89.4737 | 80.9524 | 100.0000 | 94.7080 | 34 | 8 | 29 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | map_l125_m2_e0 | homalt | 98.9515 | 98.9515 | 98.9515 | 85.7755 | 755 | 8 | 755 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | homalt | 98.9664 | 98.9664 | 98.9664 | 85.9247 | 766 | 8 | 766 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | homalt | 83.8710 | 76.4706 | 92.8571 | 87.8788 | 26 | 8 | 26 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | * | 96.4497 | 95.3216 | 97.6048 | 94.7698 | 163 | 8 | 163 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 96.7033 | 95.6522 | 97.7778 | 95.0685 | 176 | 8 | 176 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | * | 96.7213 | 95.6757 | 97.7901 | 95.1552 | 177 | 8 | 177 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 86.2069 | 75.7576 | 100.0000 | 59.0164 | 25 | 8 | 25 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.8333 | 95.8333 | 95.8333 | 44.3478 | 184 | 8 | 184 | 8 | 6 | 75.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 71.1864 | 60.0000 | 87.5000 | 90.3614 | 12 | 8 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9220 | 99.6855 | 98.1700 | 51.8185 | 2536 | 8 | 2575 | 48 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | map_l125_m0_e0 | hetalt | 40.0000 | 27.2727 | 75.0000 | 94.2857 | 3 | 8 | 3 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | homalt | 59.7701 | 76.4706 | 49.0566 | 94.4906 | 26 | 8 | 26 | 27 | 6 | 22.2222 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.8845 | 98.5348 | 97.2426 | 75.8758 | 538 | 8 | 529 | 15 | 15 | 100.0000 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.9436 | 97.8320 | 98.0556 | 80.5300 | 361 | 8 | 353 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l100_m0_e0 | homalt | 71.1111 | 66.6667 | 76.1905 | 90.5405 | 16 | 8 | 16 | 5 | 5 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m1_e0 | homalt | 78.7879 | 76.4706 | 81.2500 | 88.3636 | 26 | 8 | 26 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e0 | homalt | 78.8732 | 77.7778 | 80.0000 | 88.6731 | 28 | 8 | 28 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l125_m2_e1 | homalt | 79.4521 | 78.3784 | 80.5556 | 88.5350 | 29 | 8 | 29 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m1_e0 | homalt | 75.0000 | 69.2308 | 81.8182 | 89.0000 | 18 | 8 | 18 | 4 | 4 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e0 | homalt | 74.0741 | 71.4286 | 76.9231 | 88.9831 | 20 | 8 | 20 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | homalt | 75.0000 | 72.4138 | 77.7778 | 88.7500 | 21 | 8 | 21 | 6 | 6 | 100.0000 | |
| mlin-fermikit | INDEL | D6_15 | segdup | het | 89.9018 | 91.3043 | 88.5417 | 91.7241 | 84 | 8 | 85 | 11 | 10 | 90.9091 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m1_e0 | * | 53.8462 | 46.6667 | 63.6364 | 89.7196 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e0 | * | 53.8462 | 46.6667 | 63.6364 | 91.6031 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_l125_m2_e1 | * | 53.8462 | 46.6667 | 63.6364 | 91.7293 | 7 | 8 | 7 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | map_siren | hetalt | 66.6667 | 50.0000 | 100.0000 | 83.9286 | 8 | 8 | 9 | 0 | 0 | ||
| mlin-fermikit | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 87.8594 | 97.1731 | 80.1749 | 65.9384 | 275 | 8 | 275 | 68 | 62 | 91.1765 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.0188 | 98.3264 | 97.7131 | 72.8249 | 470 | 8 | 470 | 11 | 9 | 81.8182 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.3753 | 98.5816 | 88.6914 | 66.8807 | 556 | 8 | 549 | 70 | 69 | 98.5714 | |
| mlin-fermikit | INDEL | I6_15 | map_l150_m2_e1 | het | 62.0690 | 50.0000 | 81.8182 | 89.4231 | 8 | 8 | 9 | 2 | 1 | 50.0000 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 74.3472 | 92.7273 | 62.0482 | 92.1103 | 102 | 8 | 103 | 63 | 45 | 71.4286 | |
| mlin-fermikit | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6638 | 99.3464 | 94.1222 | 70.3644 | 1216 | 8 | 1217 | 76 | 58 | 76.3158 | |
| mlin-fermikit | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 8 | 0 | 0 | 0 | ||||
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 64.2857 | 52.9412 | 81.8182 | 97.0667 | 9 | 8 | 9 | 2 | 2 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1641 | 99.7099 | 96.6655 | 41.7144 | 2750 | 8 | 2754 | 95 | 83 | 87.3684 | |