PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52701-52750 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.6898 | 95.4839 | 100.0000 | 83.3147 | 148 | 7 | 149 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 87.4751 | 80.0000 | 96.4912 | 84.4687 | 28 | 7 | 55 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 92.0958 | 88.1356 | 96.4286 | 90.1060 | 52 | 7 | 54 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 92.3641 | 88.5246 | 96.5517 | 90.5383 | 54 | 7 | 56 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 92.3908 | 88.5246 | 96.6102 | 90.6051 | 54 | 7 | 57 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m1_e0 | het | 85.1852 | 76.6667 | 95.8333 | 94.2029 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e0 | het | 85.1852 | 76.6667 | 95.8333 | 94.7598 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l125_m2_e1 | het | 85.1852 | 76.6667 | 95.8333 | 94.8827 | 23 | 7 | 23 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.4618 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 81.8182 | 72.0000 | 94.7368 | 96.8333 | 18 | 7 | 18 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 83.3333 | 74.0741 | 95.2381 | 96.6346 | 20 | 7 | 20 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | segdup | * | 97.9592 | 96.0000 | 100.0000 | 93.3884 | 168 | 7 | 168 | 0 | 0 | ||
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.4605 | 99.8195 | 99.1042 | 60.8242 | 3871 | 7 | 3872 | 35 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.4071 | 93.1373 | 78.8618 | 92.1305 | 95 | 7 | 97 | 26 | 3 | 11.5385 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7607 | 99.5225 | 100.0000 | 43.1189 | 1459 | 7 | 1459 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 97.2222 | 1 | 7 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | segdup | * | 95.3368 | 96.3351 | 94.3590 | 94.9729 | 184 | 7 | 184 | 11 | 4 | 36.3636 | |
| ckim-gatk | INDEL | I16_PLUS | HG002complexvar | het | 99.4709 | 98.9474 | 100.0000 | 64.5414 | 658 | 7 | 634 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.4471 | 97.6589 | 93.3333 | 93.6299 | 292 | 7 | 294 | 21 | 1 | 4.7619 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 95.5905 | 97.7346 | 93.5385 | 94.1746 | 302 | 7 | 304 | 21 | 1 | 4.7619 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 95.6989 | 97.7918 | 93.6937 | 94.1905 | 310 | 7 | 312 | 21 | 1 | 4.7619 | |
| ckim-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5289 | 99.1784 | 99.8818 | 84.5845 | 845 | 7 | 845 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | * | map_l100_m0_e0 | hetalt | 72.0000 | 56.2500 | 100.0000 | 92.1053 | 9 | 7 | 9 | 0 | 0 | ||
| ckim-gatk | SNP | * | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 97.9405 | 96.8326 | 99.0741 | 91.0854 | 214 | 7 | 214 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.8252 | 99.7776 | 99.8728 | 71.9221 | 3141 | 7 | 3141 | 4 | 3 | 75.0000 | |
| ckim-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7953 | 99.6820 | 99.9089 | 42.1496 | 2194 | 7 | 2194 | 2 | 2 | 100.0000 | |
| ckim-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7825 | 99.7971 | 99.7680 | 39.6992 | 3443 | 7 | 3440 | 8 | 2 | 25.0000 | |
| ckim-gatk | SNP | tv | map_l100_m0_e0 | hetalt | 72.0000 | 56.2500 | 100.0000 | 92.1053 | 9 | 7 | 9 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | * | func_cds | het | 97.8678 | 96.7290 | 99.0338 | 42.5000 | 207 | 7 | 205 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | * | map_l150_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 94.9807 | 14 | 7 | 13 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l150_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 95.6954 | 14 | 7 | 13 | 0 | 0 | ||
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.4943 | 74.0741 | 6.2305 | 81.1065 | 20 | 7 | 20 | 301 | 3 | 0.9967 | |
| ciseli-custom | SNP | * | map_l100_m0_e0 | hetalt | 66.6667 | 56.2500 | 81.8182 | 78.0000 | 9 | 7 | 9 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 54.2839 | 89.8551 | 38.8889 | 90.3514 | 62 | 7 | 63 | 99 | 24 | 24.2424 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.5938 | 99.1094 | 88.6598 | 70.4168 | 779 | 7 | 774 | 99 | 15 | 15.1515 | |
| ciseli-custom | SNP | tv | map_l100_m0_e0 | hetalt | 66.6667 | 56.2500 | 81.8182 | 78.0000 | 9 | 7 | 9 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2974 | 99.0450 | 97.5610 | 73.6240 | 726 | 7 | 720 | 18 | 14 | 77.7778 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9159 | 99.9380 | 99.8938 | 56.3777 | 11289 | 7 | 11284 | 12 | 11 | 91.6667 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.1193 | 94.4000 | 100.0000 | 27.2727 | 118 | 7 | 120 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l125_m0_e0 | homalt | 97.3588 | 97.5352 | 97.1831 | 87.5874 | 277 | 7 | 276 | 8 | 5 | 62.5000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.8571 | 98.5656 | 87.7737 | 71.4137 | 481 | 7 | 481 | 67 | 61 | 91.0448 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 89.8396 | 97.2973 | 83.4437 | 59.6257 | 252 | 7 | 252 | 50 | 48 | 96.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.3522 | 99.0237 | 90.1015 | 65.0864 | 710 | 7 | 710 | 78 | 76 | 97.4359 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | homalt | 96.9136 | 95.7317 | 98.1250 | 90.5716 | 157 | 7 | 157 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.9804 | 98.5801 | 99.3840 | 55.4845 | 486 | 7 | 484 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.0943 | 97.2973 | 92.9889 | 49.2509 | 252 | 7 | 252 | 19 | 17 | 89.4737 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 83.6445 | 85.4167 | 81.9444 | 92.5620 | 41 | 7 | 59 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e1 | het | 84.6663 | 86.2745 | 83.1169 | 92.2457 | 44 | 7 | 64 | 13 | 7 | 53.8462 | |