PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51801-51850 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | het | 98.2172 | 98.0583 | 98.3766 | 90.6808 | 303 | 6 | 303 | 5 | 1 | 20.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | het | 98.2622 | 98.1073 | 98.4177 | 90.7331 | 311 | 6 | 311 | 5 | 1 | 20.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 83.4646 | 89.8305 | 77.9412 | 76.1404 | 53 | 6 | 53 | 15 | 14 | 93.3333 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 97.0711 | 95.0820 | 99.1453 | 67.2269 | 116 | 6 | 116 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.9394 | 91.1765 | 96.8750 | 67.6768 | 62 | 6 | 62 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 40.0000 | 33.3333 | 50.0000 | 95.8333 | 3 | 6 | 1 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.0711 | 95.0820 | 99.1453 | 62.8571 | 116 | 6 | 116 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | HG002compoundhet | hetalt | 99.5928 | 99.3039 | 99.8833 | 23.6185 | 856 | 6 | 856 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 85.7143 | 77.7778 | 95.4545 | 96.1268 | 21 | 6 | 21 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.4011 | 99.6723 | 99.1314 | 60.3701 | 1825 | 6 | 1826 | 16 | 1 | 6.2500 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7268 | 99.5907 | 99.8632 | 46.2500 | 1460 | 6 | 1460 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.6471 | 91.3043 | 94.0299 | 88.5470 | 63 | 6 | 63 | 4 | 4 | 100.0000 | |
| egarrison-hhga | SNP | tv | HG002compoundhet | hetalt | 99.5928 | 99.3039 | 99.8833 | 23.6185 | 856 | 6 | 856 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.1064 | 76.9231 | 95.2381 | 94.1989 | 20 | 6 | 20 | 1 | 1 | 100.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 88.2353 | 83.3333 | 93.7500 | 86.7769 | 30 | 6 | 30 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 40.8005 | 87.2340 | 26.6272 | 32.1285 | 41 | 6 | 45 | 124 | 115 | 92.7419 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3017 | 99.1632 | 99.4406 | 55.8914 | 711 | 6 | 711 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.8776 | 92.0000 | 95.8333 | 60.4396 | 69 | 6 | 69 | 3 | 2 | 66.6667 | |
| hfeng-pmm1 | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 91.0242 | 78 | 6 | 78 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | segdup | * | 99.4565 | 99.4560 | 99.4570 | 94.0511 | 1097 | 6 | 1099 | 6 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.6667 | 84.6154 | 100.0000 | 60.7143 | 33 | 6 | 33 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.5997 | 99.7468 | 99.4531 | 47.3533 | 2364 | 6 | 2364 | 13 | 13 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.4836 | 98.9726 | 100.0000 | 18.6798 | 578 | 6 | 579 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 73.5043 | 62 | 6 | 62 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.3846 | 91.1765 | 100.0000 | 75.0000 | 62 | 6 | 62 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 88.4837 | 120 | 6 | 120 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 76.1538 | 93 | 6 | 93 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.7328 | 43 | 6 | 43 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2558 | 96.5714 | 100.0000 | 67.1154 | 169 | 6 | 171 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6695 | 99.5598 | 99.7794 | 76.6162 | 1357 | 6 | 1357 | 3 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.7495 | 97.6834 | 95.8333 | 57.2816 | 253 | 6 | 253 | 11 | 10 | 90.9091 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8186 | 99.1632 | 98.4765 | 57.3034 | 711 | 6 | 711 | 11 | 10 | 90.9091 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 91.0138 | 78 | 6 | 78 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.4932 | 99.8351 | 99.1537 | 57.8723 | 3632 | 6 | 3632 | 31 | 29 | 93.5484 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 90.4610 | 120 | 6 | 120 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_siren | het | 98.0322 | 97.8571 | 98.2079 | 85.3850 | 274 | 6 | 274 | 5 | 1 | 20.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | segdup | hetalt | 93.4783 | 87.7551 | 100.0000 | 90.6318 | 43 | 6 | 43 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | HG002compoundhet | het | 89.2228 | 87.2340 | 91.3043 | 94.7005 | 41 | 6 | 21 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.5157 | 97.8799 | 95.1890 | 68.7433 | 277 | 6 | 277 | 14 | 14 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m0_e0 | * | 88.5246 | 81.8182 | 96.4286 | 91.9540 | 27 | 6 | 27 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | SNP | * | segdup | homalt | 99.9116 | 99.9441 | 99.8791 | 88.8962 | 10737 | 6 | 10737 | 13 | 13 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7135 | 99.5098 | 99.9180 | 66.6027 | 1218 | 6 | 1218 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4048 | 98.8166 | 100.0000 | 87.0810 | 501 | 6 | 501 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7660 | 99.5995 | 99.9330 | 82.9644 | 1492 | 6 | 1492 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.8016 | 99.6604 | 99.9432 | 62.6695 | 1761 | 6 | 1761 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.5285 | 88.0000 | 91.1111 | 83.4559 | 44 | 6 | 41 | 4 | 2 | 50.0000 | |
| hfeng-pmm3 | INDEL | * | map_l250_m1_e0 | het | 95.5844 | 96.8421 | 94.3590 | 95.3527 | 184 | 6 | 184 | 11 | 2 | 18.1818 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e0 | het | 96.0000 | 97.1429 | 94.8837 | 95.4908 | 204 | 6 | 204 | 11 | 2 | 18.1818 | |
| hfeng-pmm3 | INDEL | * | map_l250_m2_e1 | het | 96.0187 | 97.1564 | 94.9074 | 95.5891 | 205 | 6 | 205 | 11 | 2 | 18.1818 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.7479 | 97.0149 | 96.4824 | 86.9251 | 195 | 6 | 192 | 7 | 1 | 14.2857 | |