PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51601-51650 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | het | 94.5127 | 91.5493 | 97.6744 | 86.4139 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | het | 94.5127 | 91.5493 | 97.6744 | 86.6460 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | * | 95.0594 | 92.6829 | 97.5610 | 90.7240 | 76 | 6 | 80 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | func_cds | * | 66.6667 | 50.0000 | 100.0000 | 50.0000 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 51.8519 | 53.8462 | 50.0000 | 71.4286 | 7 | 6 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m1_e0 | het | 50.0000 | 33.3333 | 100.0000 | 81.2500 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e0 | het | 50.0000 | 33.3333 | 100.0000 | 82.3529 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I16_PLUS | map_l125_m2_e1 | het | 50.0000 | 33.3333 | 100.0000 | 83.3333 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | HG002compoundhet | homalt | 9.4162 | 80.6452 | 5.0000 | 41.3146 | 25 | 6 | 25 | 475 | 473 | 99.5789 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.0000 | 53.8462 | 100.0000 | 53.8462 | 7 | 6 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 66.6667 | 50.0000 | 100.0000 | 14.2857 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | het | 78.5714 | 64.7059 | 100.0000 | 88.3929 | 11 | 6 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 80.0000 | 16 | 6 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 84.2105 | 72.7273 | 100.0000 | 80.5556 | 16 | 6 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 84.2105 | 72.7273 | 100.0000 | 81.0811 | 16 | 6 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m1_e0 | * | 84.4444 | 76.0000 | 95.0000 | 91.4530 | 19 | 6 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m1_e0 | het | 75.0000 | 60.0000 | 100.0000 | 92.8058 | 9 | 6 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e0 | * | 84.4444 | 76.0000 | 95.0000 | 92.6740 | 19 | 6 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 93.6306 | 9 | 6 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e1 | * | 85.7143 | 77.7778 | 95.4545 | 92.3345 | 21 | 6 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e1 | het | 76.9231 | 62.5000 | 100.0000 | 93.3333 | 10 | 6 | 11 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | func_cds | het | 99.3985 | 99.9462 | 98.8568 | 33.7832 | 11155 | 6 | 11155 | 129 | 2 | 1.5504 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1269 | 99.7642 | 96.5426 | 62.1131 | 2538 | 6 | 2541 | 91 | 11 | 12.0879 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6843 | 99.5795 | 99.7893 | 29.7830 | 1421 | 6 | 1421 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.7500 | 64.7059 | 73.3333 | 97.4576 | 11 | 6 | 11 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 78.9474 | 83.3333 | 75.0000 | 90.5660 | 30 | 6 | 30 | 10 | 1 | 10.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | hetalt | 62.5000 | 45.4545 | 100.0000 | 98.8399 | 5 | 6 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.1453 | 3 | 6 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 62.5000 | 45.4545 | 100.0000 | 87.5000 | 5 | 6 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l125_m0_e0 | * | 66.6667 | 50.0000 | 100.0000 | 98.1651 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m1_e0 | * | 75.0000 | 60.0000 | 100.0000 | 97.8469 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m1_e0 | het | 72.7273 | 57.1429 | 100.0000 | 97.7077 | 8 | 6 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e0 | * | 78.5714 | 64.7059 | 100.0000 | 97.5877 | 11 | 6 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e0 | het | 76.9231 | 62.5000 | 100.0000 | 97.3890 | 10 | 6 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | map_l150_m2_e1 | het | 76.9231 | 62.5000 | 100.0000 | 97.4293 | 10 | 6 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 53.8462 | 87.5000 | 93.7500 | 7 | 6 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 98.3784 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 98.4155 | 9 | 6 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | HG002compoundhet | homalt | 37.8738 | 75.0000 | 25.3333 | 81.1558 | 18 | 6 | 19 | 56 | 53 | 94.6429 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m1_e0 | het | 70.0000 | 60.0000 | 84.0000 | 86.8421 | 9 | 6 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e0 | het | 70.0000 | 60.0000 | 84.0000 | 87.9808 | 9 | 6 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | I6_15 | map_l150_m2_e1 | het | 71.6724 | 62.5000 | 84.0000 | 88.4259 | 10 | 6 | 21 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | * | func_cds | * | 98.2084 | 99.9669 | 96.5106 | 26.4105 | 18144 | 6 | 17950 | 649 | 1 | 0.1541 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 95.3296 | 99.8474 | 91.2029 | 66.5610 | 3925 | 6 | 3753 | 362 | 12 | 3.3149 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.5435 | 99.8700 | 97.2518 | 40.3648 | 4610 | 6 | 4388 | 124 | 9 | 7.2581 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4164 | 99.4681 | 99.3648 | 53.1463 | 1122 | 6 | 1095 | 7 | 2 | 28.5714 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.1521 | 99.7642 | 92.7925 | 63.8373 | 2538 | 6 | 2459 | 191 | 10 | 5.2356 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.5761 | 99.5795 | 99.5726 | 29.1625 | 1421 | 6 | 1398 | 6 | 2 | 33.3333 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 45.4277 | 64.7059 | 35.0000 | 94.0828 | 11 | 6 | 7 | 13 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 69.1849 | 85.7143 | 58.0000 | 87.4372 | 36 | 6 | 29 | 21 | 4 | 19.0476 | |