PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51401-51450 / 86044 show all | |||||||||||||||
| jli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.8967 | 99.3952 | 98.4032 | 71.6308 | 986 | 6 | 986 | 16 | 2 | 12.5000 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.8742 | 37 | 6 | 37 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | * | homalt | 99.0018 | 99.6454 | 98.3664 | 70.1757 | 1686 | 6 | 1686 | 28 | 20 | 71.4286 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6508 | 99.5196 | 97.7970 | 74.4625 | 1243 | 6 | 1243 | 28 | 20 | 71.4286 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3925 | 99.2718 | 99.5134 | 71.4682 | 818 | 6 | 818 | 4 | 1 | 25.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.3229 | 98.3425 | 83.5125 | 84.0206 | 356 | 6 | 233 | 46 | 44 | 95.6522 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6508 | 99.5196 | 97.7970 | 74.4625 | 1243 | 6 | 1243 | 28 | 20 | 71.4286 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.7542 | 99.0148 | 94.5946 | 84.0288 | 603 | 6 | 525 | 30 | 27 | 90.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | het | 83.3333 | 91.5493 | 76.4706 | 91.2099 | 65 | 6 | 65 | 20 | 19 | 95.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | het | 82.8025 | 91.5493 | 75.5814 | 91.2779 | 65 | 6 | 65 | 21 | 20 | 95.2381 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m1_e0 | homalt | 86.9565 | 76.9231 | 100.0000 | 85.1852 | 20 | 6 | 20 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e0 | homalt | 88.0000 | 78.5714 | 100.0000 | 85.8065 | 22 | 6 | 22 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m1_e0 | het | 70.5882 | 66.6667 | 75.0000 | 79.7468 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e0 | het | 70.5882 | 66.6667 | 75.0000 | 82.9787 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l100_m2_e1 | het | 70.5882 | 66.6667 | 75.0000 | 83.1579 | 12 | 6 | 12 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m1_e0 | * | 52.6316 | 45.4545 | 62.5000 | 84.3137 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e0 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | map_l150_m2_e1 | * | 52.6316 | 45.4545 | 62.5000 | 86.2069 | 5 | 6 | 5 | 3 | 3 | 100.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | segdup | het | 76.5957 | 75.0000 | 78.2609 | 93.5393 | 18 | 6 | 18 | 5 | 5 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | het | 42.8571 | 33.3333 | 60.0000 | 96.2963 | 3 | 6 | 3 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | tech_badpromoters | * | 58.3333 | 53.8462 | 63.6364 | 54.1667 | 7 | 6 | 7 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.4333 | 99.6568 | 93.4119 | 74.1305 | 1742 | 6 | 1744 | 123 | 51 | 41.4634 | |
| jpowers-varprowl | SNP | * | segdup | homalt | 99.4812 | 99.9441 | 99.0225 | 89.9716 | 10737 | 6 | 10738 | 106 | 65 | 61.3208 | |
| jpowers-varprowl | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 6 | 0 | 0 | 0 | |||
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.1918 | 90.9091 | 75.0000 | 96.2512 | 60 | 6 | 60 | 20 | 3 | 15.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7778 | 99.5565 | 100.0000 | 70.0067 | 1347 | 6 | 1341 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.7840 | 88.0000 | 93.7500 | 82.8571 | 44 | 6 | 45 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m1_e0 | homalt | 99.2467 | 99.1803 | 99.3132 | 84.0316 | 726 | 6 | 723 | 5 | 3 | 60.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 95.3349 | 37 | 6 | 39 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4586 | 97.3913 | 99.5495 | 58.8889 | 224 | 6 | 221 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.1940 | 78.5714 | 95.4545 | 89.0000 | 22 | 6 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.4545 | 91.3043 | 100.0000 | 69.3396 | 63 | 6 | 65 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8235 | 97.6744 | 100.0000 | 58.1549 | 252 | 6 | 254 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4475 | 98.9011 | 100.0000 | 72.3149 | 540 | 6 | 531 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_siren | hetalt | 95.1069 | 92.8571 | 97.4684 | 93.1245 | 78 | 6 | 77 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3000 | 98.9583 | 99.6441 | 61.5332 | 570 | 6 | 560 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.3077 | 85.7143 | 100.0000 | 99.0500 | 36 | 6 | 38 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5867 | 99.2941 | 99.8810 | 43.2816 | 844 | 6 | 839 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | * | 94.5605 | 94.1748 | 94.9495 | 84.3106 | 97 | 6 | 94 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m1_e0 | * | 97.3684 | 94.8718 | 100.0000 | 86.2069 | 111 | 6 | 108 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 86.3208 | 120 | 6 | 116 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | hetalt | 96.3564 | 93.9394 | 98.9011 | 80.3456 | 93 | 6 | 90 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 77.4194 | 66.6667 | 92.3077 | 69.0476 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 77.4194 | 66.6667 | 92.3077 | 72.3404 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 77.4194 | 66.6667 | 92.3077 | 72.3404 | 12 | 6 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 71.6418 | 60.0000 | 88.8889 | 84.4828 | 9 | 6 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 71.6418 | 60.0000 | 88.8889 | 86.3636 | 9 | 6 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 71.6418 | 60.0000 | 88.8889 | 86.5672 | 9 | 6 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | map_siren | hetalt | 76.9231 | 62.5000 | 100.0000 | 82.1429 | 10 | 6 | 10 | 0 | 0 | ||