PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50201-50250 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.3590 | 98.9362 | 99.7854 | 67.0205 | 465 | 5 | 465 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | * | 98.9891 | 99.0792 | 98.8991 | 83.0903 | 538 | 5 | 539 | 6 | 3 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | het | 98.9224 | 98.4663 | 99.3827 | 84.2412 | 321 | 5 | 322 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.9697 | 94.1176 | 100.0000 | 53.1792 | 80 | 5 | 81 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3607 | 96.7742 | 100.0000 | 81.6176 | 150 | 5 | 150 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9079 | 95.9016 | 100.0000 | 58.5714 | 117 | 5 | 116 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | map_l100_m0_e0 | het | 80.0000 | 70.5882 | 92.3077 | 91.8750 | 12 | 5 | 12 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l125_m0_e0 | * | 76.9231 | 66.6667 | 90.9091 | 94.8598 | 10 | 5 | 10 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m1_e0 | * | 86.9565 | 80.0000 | 95.2381 | 93.9655 | 20 | 5 | 20 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e0 | * | 86.9565 | 80.0000 | 95.2381 | 94.6835 | 20 | 5 | 20 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 88.0000 | 81.4815 | 95.6522 | 94.4712 | 22 | 5 | 22 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7241 | 99.7700 | 99.6783 | 64.5024 | 2169 | 5 | 2169 | 7 | 0 | 0.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.3563 | 95.9677 | 96.7480 | 90.6535 | 119 | 5 | 119 | 4 | 2 | 50.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4059 | 99.0138 | 99.8012 | 86.2267 | 502 | 5 | 502 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | tv | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| ckim-vqsr | SNP | tv | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5115 | 99.3179 | 97.7181 | 73.3548 | 728 | 5 | 728 | 17 | 13 | 76.4706 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6744 | 99.4583 | 99.8915 | 30.2044 | 918 | 5 | 921 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m0_e0 | * | 90.1235 | 93.5897 | 86.9048 | 97.9749 | 73 | 5 | 73 | 11 | 2 | 18.1818 | |
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | homalt | 96.2963 | 95.4128 | 97.1963 | 95.1496 | 104 | 5 | 104 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | homalt | 96.4912 | 95.6522 | 97.3451 | 95.5424 | 110 | 5 | 110 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | homalt | 96.5217 | 95.6897 | 97.3684 | 95.6322 | 111 | 5 | 111 | 3 | 2 | 66.6667 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2777 | 97.5124 | 95.0739 | 88.6465 | 196 | 5 | 193 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.3932 | 99.3932 | 99.3932 | 71.3192 | 819 | 5 | 819 | 5 | 1 | 20.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.4993 | 99.5404 | 97.4797 | 67.4289 | 1083 | 5 | 1083 | 28 | 22 | 78.5714 | |
| dgrover-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 78.7402 | 25 | 5 | 27 | 0 | 0 | ||
| dgrover-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8468 | 99.7812 | 99.9125 | 47.3260 | 2280 | 5 | 2283 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.4073 | 99.1554 | 99.6604 | 83.4225 | 587 | 5 | 587 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.4258 | 99.1817 | 99.6711 | 84.0629 | 606 | 5 | 606 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.4341 | 99.1935 | 99.6759 | 84.1347 | 615 | 5 | 615 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 90.6760 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdup | * | 99.5471 | 99.5467 | 99.5475 | 94.9619 | 1098 | 5 | 1100 | 5 | 2 | 40.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6017 | 99.5025 | 99.7012 | 65.7688 | 1000 | 5 | 1001 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I6_15 | map_l150_m0_e0 | * | 54.5455 | 37.5000 | 100.0000 | 97.7612 | 3 | 5 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.0000 | 66.6667 | 100.0000 | 92.4242 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | * | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 85.7143 | 4 | 5 | 4 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l125_m0_e0 | hetalt | 54.5455 | 37.5000 | 100.0000 | 85.7143 | 3 | 5 | 3 | 0 | 0 | ||
| ckim-isaac | SNP | tv | map_l125_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 85.7143 | 4 | 5 | 4 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.5072 | 98.6072 | 75.4797 | 48.5746 | 354 | 5 | 354 | 115 | 114 | 99.1304 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.9592 | 96.0000 | 100.0000 | 26.9461 | 120 | 5 | 122 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | hetalt | 91.8033 | 84.8485 | 100.0000 | 91.3690 | 28 | 5 | 29 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l100_m0_e0 | homalt | 98.8235 | 99.0177 | 98.6301 | 85.4747 | 504 | 5 | 504 | 7 | 4 | 57.1429 | |
| ckim-vqsr | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.0556 | 35 | 5 | 35 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 93.5875 | 37 | 5 | 37 | 0 | 0 | ||
| ckim-vqsr | INDEL | D16_PLUS | * | homalt | 99.0314 | 99.7045 | 98.3673 | 70.9863 | 1687 | 5 | 1687 | 28 | 22 | 78.5714 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.6910 | 99.5997 | 97.7987 | 75.1563 | 1244 | 5 | 1244 | 28 | 22 | 78.5714 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2480 | 97.5124 | 96.9849 | 88.9751 | 196 | 5 | 193 | 6 | 1 | 16.6667 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5140 | 99.3932 | 99.6350 | 71.6258 | 819 | 5 | 819 | 3 | 1 | 33.3333 | |