PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2601-2650 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | homalt | 99.6880 | 99.6880 | 99.6880 | 65.4385 | 3834 | 12 | 3834 | 12 | 4 | 33.3333 | |
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | het | 99.2295 | 98.9754 | 99.4850 | 70.4702 | 7148 | 74 | 7147 | 37 | 11 | 29.7297 | |
| hfeng-pmm1 | SNP | tv | map_l100_m0_e0 | * | 99.3900 | 99.2241 | 99.5564 | 68.9143 | 10998 | 86 | 10997 | 49 | 15 | 30.6122 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.3051 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 35.1338 | 1309 | 2 | 1309 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2232 | 98.5968 | 99.8577 | 35.0385 | 2108 | 30 | 2105 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4759 | 99.0435 | 99.9122 | 35.0997 | 3417 | 33 | 3414 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 92.3077 | 100.0000 | 85.7143 | 92.0455 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.8621 | 61.1111 | 100.0000 | 90.0901 | 22 | 14 | 22 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 78.8732 | 66.6667 | 96.5517 | 90.6452 | 28 | 14 | 28 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 37.0751 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 66.6667 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1845 | 98.5711 | 99.8055 | 37.0083 | 4622 | 67 | 4619 | 9 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.4544 | 99.0741 | 99.8377 | 37.0787 | 7383 | 69 | 7380 | 12 | 3 | 25.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9743 | 99.9743 | 99.9743 | 59.5146 | 3886 | 1 | 3886 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7572 | 99.5298 | 99.9857 | 59.8113 | 6986 | 33 | 6983 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8348 | 99.6884 | 99.9816 | 59.7111 | 10877 | 34 | 10874 | 2 | 1 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 87.5000 | 77.7778 | 100.0000 | 95.7831 | 7 | 2 | 7 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 58.8235 | 90.9091 | 97.3430 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.2727 | 65.3846 | 94.4444 | 96.9072 | 17 | 9 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7164 | 99.4907 | 99.9431 | 61.2384 | 1758 | 9 | 1758 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9888 | 96.2435 | 99.7985 | 65.0879 | 2972 | 116 | 2972 | 6 | 5 | 83.3333 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.6241 | 97.4259 | 99.8523 | 63.8155 | 4731 | 125 | 4731 | 7 | 6 | 85.7143 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.8339 | 99.7418 | 99.9261 | 75.6588 | 5409 | 14 | 5409 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0945 | 15 | 0 | 15 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5604 | 97.4488 | 99.6975 | 72.9214 | 8900 | 233 | 8900 | 27 | 5 | 18.5185 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0389 | 98.3049 | 99.7840 | 74.1160 | 14324 | 247 | 14324 | 31 | 7 | 22.5806 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7323 | 99.4660 | 100.0000 | 82.1364 | 1490 | 8 | 1490 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3415 | 3 | 0 | 3 | 0 | 0 | ||